Hb_002249_090

Information

Type -
Description -
Location Contig2249: 93712-95163
Sequence    

Annotation

kegg
ID rcu:RCOM_1503660
description Magnesium-protoporphyrin O-methyltransferase, putative (EC:2.1.1.11)
nr
ID XP_012090586.1
description PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
swissprot
ID Q9SW18
description Magnesium protoporphyrin IX methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=CHLM PE=1 SV=1
trembl
ID A0A067JFB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26368 PE=4 SV=1
Gene Ontology
ID GO:0009534
description magnesium protoporphyrin ix chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23400: 93706-95092
cDNA
(Sanger)
(ID:Location)		 001_C16.ab1: 93716-94625 , 002_G08.ab1: 93711-94546 , 043_I03.ab1: 93716-94491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_090 0.0 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
2 Hb_003602_100 0.0775554813 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_000174_080 0.0813453459 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
4 Hb_002609_140 0.0876416054 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000544_070 0.0956036629 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
6 Hb_000648_070 0.0959121544 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
7 Hb_107647_010 0.1032290004 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
8 Hb_117807_020 0.1035792269 - - methyltransferase, putative [Ricinus communis]
9 Hb_010407_090 0.1045864373 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
10 Hb_000083_180 0.1120462975 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
11 Hb_007803_040 0.112984698 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
12 Hb_020648_030 0.1149657399 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
13 Hb_005015_100 0.1163422678 - - PREDICTED: uncharacterized protein LOC105636541 isoform X1 [Jatropha curcas]
14 Hb_006198_030 0.1177338251 - - conserved hypothetical protein [Ricinus communis]
15 Hb_021531_010 0.1181853921 - - receptor-kinase, putative [Ricinus communis]
16 Hb_020805_050 0.1182550726 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
17 Hb_000881_070 0.1185363794 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_003120_020 0.1231275509 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
19 Hb_003020_120 0.123377196 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
20 Hb_000676_320 0.1234748424 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]

Gene co-expression network

sample Hb_002249_090 Hb_002249_090 Hb_003602_100 Hb_003602_100 Hb_002249_090--Hb_003602_100 Hb_000174_080 Hb_000174_080 Hb_002249_090--Hb_000174_080 Hb_002609_140 Hb_002609_140 Hb_002249_090--Hb_002609_140 Hb_000544_070 Hb_000544_070 Hb_002249_090--Hb_000544_070 Hb_000648_070 Hb_000648_070 Hb_002249_090--Hb_000648_070 Hb_107647_010 Hb_107647_010 Hb_002249_090--Hb_107647_010 Hb_001195_290 Hb_001195_290 Hb_003602_100--Hb_001195_290 Hb_003120_020 Hb_003120_020 Hb_003602_100--Hb_003120_020 Hb_010326_020 Hb_010326_020 Hb_003602_100--Hb_010326_020 Hb_000049_100 Hb_000049_100 Hb_003602_100--Hb_000049_100 Hb_007803_040 Hb_007803_040 Hb_003602_100--Hb_007803_040 Hb_137216_010 Hb_137216_010 Hb_000174_080--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_000174_080--Hb_002071_030 Hb_000174_080--Hb_003602_100 Hb_000174_080--Hb_007803_040 Hb_000009_510 Hb_000009_510 Hb_000174_080--Hb_000009_510 Hb_005977_040 Hb_005977_040 Hb_002609_140--Hb_005977_040 Hb_002609_140--Hb_000544_070 Hb_004306_090 Hb_004306_090 Hb_002609_140--Hb_004306_090 Hb_002609_140--Hb_107647_010 Hb_117807_020 Hb_117807_020 Hb_002609_140--Hb_117807_020 Hb_000544_070--Hb_004306_090 Hb_002485_050 Hb_002485_050 Hb_000544_070--Hb_002485_050 Hb_000544_070--Hb_007803_040 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_074548_010 Hb_074548_010 Hb_000544_070--Hb_074548_010 Hb_001287_020 Hb_001287_020 Hb_000648_070--Hb_001287_020 Hb_000510_180 Hb_000510_180 Hb_000648_070--Hb_000510_180 Hb_002215_030 Hb_002215_030 Hb_000648_070--Hb_002215_030 Hb_028227_060 Hb_028227_060 Hb_000648_070--Hb_028227_060 Hb_002007_120 Hb_002007_120 Hb_000648_070--Hb_002007_120 Hb_010407_090 Hb_010407_090 Hb_107647_010--Hb_010407_090 Hb_107647_010--Hb_005977_040 Hb_107373_010 Hb_107373_010 Hb_107647_010--Hb_107373_010 Hb_107647_010--Hb_117807_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.35668 13.6901 359.116 77.8815 7.86428 6.57713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.9908 4.61207 1.9923 5.98829 519.223

CAGE analysis