Hb_002249_100

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig2249: 95364-96868
Sequence    

Annotation

kegg
ID vvi:100266238
description trihelix transcription factor GT-2-like
nr
ID XP_012090781.1
description PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JI81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26369 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_100 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
2 Hb_001490_030 0.2212146242 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
3 Hb_000786_030 0.242906012 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
4 Hb_004445_020 0.2472116391 - - hypothetical protein JCGZ_13166 [Jatropha curcas]
5 Hb_000337_050 0.248288748 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
6 Hb_001439_060 0.2484276856 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
7 Hb_067069_010 0.2553600259 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
8 Hb_000052_020 0.2594018656 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
9 Hb_001491_010 0.260179191 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
10 Hb_000134_280 0.2603592984 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
11 Hb_000661_080 0.2614255524 - - monoxygenase, putative [Ricinus communis]
12 Hb_003976_020 0.2620859209 - - Regulator of ribonuclease activity A, putative [Ricinus communis]
13 Hb_082609_010 0.2622853673 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
14 Hb_021576_030 0.2651569058 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
15 Hb_031718_010 0.2665407124 - - -
16 Hb_000160_300 0.2680448769 - - hypothetical protein POPTR_0004s08720g [Populus trichocarpa]
17 Hb_000861_020 0.2688493023 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
18 Hb_018133_090 0.2705018267 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000622_240 0.2711105815 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
20 Hb_027654_060 0.2715866637 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]

Gene co-expression network

sample Hb_002249_100 Hb_002249_100 Hb_001490_030 Hb_001490_030 Hb_002249_100--Hb_001490_030 Hb_000786_030 Hb_000786_030 Hb_002249_100--Hb_000786_030 Hb_004445_020 Hb_004445_020 Hb_002249_100--Hb_004445_020 Hb_000337_050 Hb_000337_050 Hb_002249_100--Hb_000337_050 Hb_001439_060 Hb_001439_060 Hb_002249_100--Hb_001439_060 Hb_067069_010 Hb_067069_010 Hb_002249_100--Hb_067069_010 Hb_003813_020 Hb_003813_020 Hb_001490_030--Hb_003813_020 Hb_000622_240 Hb_000622_240 Hb_001490_030--Hb_000622_240 Hb_001712_020 Hb_001712_020 Hb_001490_030--Hb_001712_020 Hb_000107_570 Hb_000107_570 Hb_001490_030--Hb_000107_570 Hb_004241_020 Hb_004241_020 Hb_001490_030--Hb_004241_020 Hb_000156_210 Hb_000156_210 Hb_001490_030--Hb_000156_210 Hb_000672_020 Hb_000672_020 Hb_000786_030--Hb_000672_020 Hb_003030_030 Hb_003030_030 Hb_000786_030--Hb_003030_030 Hb_002422_070 Hb_002422_070 Hb_000786_030--Hb_002422_070 Hb_027760_020 Hb_027760_020 Hb_000786_030--Hb_027760_020 Hb_000656_090 Hb_000656_090 Hb_000786_030--Hb_000656_090 Hb_003352_040 Hb_003352_040 Hb_000786_030--Hb_003352_040 Hb_005078_010 Hb_005078_010 Hb_004445_020--Hb_005078_010 Hb_000084_200 Hb_000084_200 Hb_004445_020--Hb_000084_200 Hb_138781_010 Hb_138781_010 Hb_004445_020--Hb_138781_010 Hb_004445_020--Hb_003030_030 Hb_032920_050 Hb_032920_050 Hb_004445_020--Hb_032920_050 Hb_026745_020 Hb_026745_020 Hb_004445_020--Hb_026745_020 Hb_000289_110 Hb_000289_110 Hb_000337_050--Hb_000289_110 Hb_018133_090 Hb_018133_090 Hb_000337_050--Hb_018133_090 Hb_003086_080 Hb_003086_080 Hb_000337_050--Hb_003086_080 Hb_001366_180 Hb_001366_180 Hb_000337_050--Hb_001366_180 Hb_005144_050 Hb_005144_050 Hb_000337_050--Hb_005144_050 Hb_003020_260 Hb_003020_260 Hb_000337_050--Hb_003020_260 Hb_001439_060--Hb_018133_090 Hb_000861_020 Hb_000861_020 Hb_001439_060--Hb_000861_020 Hb_001491_010 Hb_001491_010 Hb_001439_060--Hb_001491_010 Hb_015941_020 Hb_015941_020 Hb_001439_060--Hb_015941_020 Hb_012760_190 Hb_012760_190 Hb_001439_060--Hb_012760_190 Hb_001439_060--Hb_000337_050 Hb_002534_030 Hb_002534_030 Hb_067069_010--Hb_002534_030 Hb_001889_010 Hb_001889_010 Hb_067069_010--Hb_001889_010 Hb_005588_110 Hb_005588_110 Hb_067069_010--Hb_005588_110 Hb_008698_010 Hb_008698_010 Hb_067069_010--Hb_008698_010 Hb_000012_160 Hb_000012_160 Hb_067069_010--Hb_000012_160 Hb_006637_080 Hb_006637_080 Hb_067069_010--Hb_006637_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0608482 0 0.0312012 0.0171638 0 0.0892433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0463998 0.109487 0.0674765 0.0293049 0.150052

CAGE analysis