Hb_002249_120

Information

Type -
Description -
Location Contig2249: 129672-138050
Sequence    

Annotation

kegg
ID rcu:RCOM_1503540
description RNA-binding protein, putative
nr
ID XP_002511091.1
description RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q64M78
description Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2 SV=1
trembl
ID B9RA66
description RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1503540 PE=4 SV=1
Gene Ontology
ID GO:0000166
description protein mei2-like 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23404: 129589-131883 , PASA_asmbl_23405: 129589-138150 , PASA_asmbl_23406: 129513-133957 , PASA_asmbl_23407: 129623-130577 , PASA_asmbl_23408: 133969-138150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_120 0.0 - - RNA-binding protein, putative [Ricinus communis]
2 Hb_002681_170 0.0746546301 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
3 Hb_002307_350 0.0797031329 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
4 Hb_017895_020 0.0874634628 - - Vacuolar protein sorting protein, putative [Ricinus communis]
5 Hb_003436_050 0.0897529439 - - arf gtpase-activating protein, putative [Ricinus communis]
6 Hb_005408_020 0.0905387602 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001900_120 0.0917508783 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
8 Hb_000566_100 0.0934215375 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
9 Hb_030827_030 0.0946594904 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
10 Hb_000735_100 0.096322482 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
11 Hb_001473_090 0.0968408014 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
12 Hb_000029_320 0.0977461548 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
13 Hb_000025_650 0.0977486413 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
14 Hb_002749_110 0.0986729561 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
15 Hb_008725_130 0.1004133945 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
16 Hb_002249_160 0.1006631274 - - -
17 Hb_011609_170 0.101674678 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
18 Hb_001050_010 0.1025317255 - - Advillin [Gossypium arboreum]
19 Hb_011915_010 0.1038836383 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
20 Hb_003126_100 0.1046811796 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]

Gene co-expression network

sample Hb_002249_120 Hb_002249_120 Hb_002681_170 Hb_002681_170 Hb_002249_120--Hb_002681_170 Hb_002307_350 Hb_002307_350 Hb_002249_120--Hb_002307_350 Hb_017895_020 Hb_017895_020 Hb_002249_120--Hb_017895_020 Hb_003436_050 Hb_003436_050 Hb_002249_120--Hb_003436_050 Hb_005408_020 Hb_005408_020 Hb_002249_120--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_002249_120--Hb_001900_120 Hb_000031_280 Hb_000031_280 Hb_002681_170--Hb_000031_280 Hb_002092_100 Hb_002092_100 Hb_002681_170--Hb_002092_100 Hb_008556_030 Hb_008556_030 Hb_002681_170--Hb_008556_030 Hb_002805_060 Hb_002805_060 Hb_002681_170--Hb_002805_060 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210 Hb_002307_350--Hb_005408_020 Hb_008725_130 Hb_008725_130 Hb_002307_350--Hb_008725_130 Hb_002307_350--Hb_017895_020 Hb_000914_080 Hb_000914_080 Hb_002307_350--Hb_000914_080 Hb_000021_020 Hb_000021_020 Hb_002307_350--Hb_000021_020 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_017895_020--Hb_000329_130 Hb_017895_020--Hb_001900_120 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_017895_020--Hb_000914_080 Hb_000029_320 Hb_000029_320 Hb_003436_050--Hb_000029_320 Hb_012404_070 Hb_012404_070 Hb_003436_050--Hb_012404_070 Hb_003029_130 Hb_003029_130 Hb_003436_050--Hb_003029_130 Hb_003436_050--Hb_017895_020 Hb_001473_090 Hb_001473_090 Hb_003436_050--Hb_001473_090 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_005408_020--Hb_000914_080 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_001900_120--Hb_002675_040 Hb_001900_120--Hb_000329_130 Hb_001050_010 Hb_001050_010 Hb_001900_120--Hb_001050_010 Hb_001900_120--Hb_011609_170 Hb_001900_120--Hb_008725_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.7336 14.9732 19.7701 19.3037 44.3114 39.0395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1243 4.54588 10.7518 11.6146 17.8733

CAGE analysis