Hb_002249_170

Information

Type -
Description -
Location Contig2249: 169297-178198
Sequence    

Annotation

kegg
ID rcu:RCOM_1503390
description copine, putative
nr
ID XP_002511086.1
description copine, putative [Ricinus communis]
swissprot
ID Q941L3
description Protein BONZAI 1 OS=Arabidopsis thaliana GN=BON1 PE=1 SV=2
trembl
ID B9RA61
description Copine, putative OS=Ricinus communis GN=RCOM_1503390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23413: 169242-178162 , PASA_asmbl_23415: 170483-170618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_170 0.0 - - copine, putative [Ricinus communis]
2 Hb_001318_150 0.0974868052 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
3 Hb_054865_050 0.0985954631 - - calcium-dependent protein kinase, putative [Ricinus communis]
4 Hb_003106_200 0.1013647355 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
5 Hb_011671_110 0.1035033315 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
6 Hb_086639_050 0.1073396978 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_001247_210 0.1076796265 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000818_120 0.1106773915 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001729_020 0.1145901547 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
10 Hb_001155_050 0.1156663094 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
11 Hb_015026_020 0.11626957 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
12 Hb_001117_080 0.116370986 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
13 Hb_002965_080 0.1195819663 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
14 Hb_000375_060 0.1196366159 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
15 Hb_000111_390 0.1208585035 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
16 Hb_011671_340 0.1216687277 - - small GTPase [Hevea brasiliensis]
17 Hb_000979_140 0.1220784949 - - kinase family protein [Populus trichocarpa]
18 Hb_001511_030 0.122572717 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
19 Hb_080147_020 0.1227791728 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
20 Hb_000098_180 0.1232263631 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002249_170 Hb_002249_170 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210 Hb_000272_110 Hb_000272_110 Hb_001318_150--Hb_000272_110 Hb_001085_300 Hb_001085_300 Hb_001318_150--Hb_001085_300 Hb_001318_150--Hb_086639_050 Hb_048476_040 Hb_048476_040 Hb_001318_150--Hb_048476_040 Hb_000111_390 Hb_000111_390 Hb_001318_150--Hb_000111_390 Hb_009449_100 Hb_009449_100 Hb_054865_050--Hb_009449_100 Hb_005064_070 Hb_005064_070 Hb_054865_050--Hb_005064_070 Hb_000375_060 Hb_000375_060 Hb_054865_050--Hb_000375_060 Hb_001514_240 Hb_001514_240 Hb_054865_050--Hb_001514_240 Hb_000098_180 Hb_000098_180 Hb_054865_050--Hb_000098_180 Hb_000928_250 Hb_000928_250 Hb_003106_200--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_003106_200--Hb_015026_020 Hb_000818_120 Hb_000818_120 Hb_003106_200--Hb_000818_120 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003106_200--Hb_001198_080 Hb_001894_160 Hb_001894_160 Hb_011671_110--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_011671_110--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_011671_110--Hb_033930_010 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_002411_160 Hb_002411_160 Hb_086639_050--Hb_002411_160 Hb_080147_020 Hb_080147_020 Hb_086639_050--Hb_080147_020 Hb_001117_080 Hb_001117_080 Hb_086639_050--Hb_001117_080 Hb_000567_090 Hb_000567_090 Hb_086639_050--Hb_000567_090 Hb_086639_050--Hb_000111_390 Hb_023091_010 Hb_023091_010 Hb_001247_210--Hb_023091_010 Hb_004577_010 Hb_004577_010 Hb_001247_210--Hb_004577_010 Hb_004718_060 Hb_004718_060 Hb_001247_210--Hb_004718_060 Hb_002026_090 Hb_002026_090 Hb_001247_210--Hb_002026_090 Hb_011188_010 Hb_011188_010 Hb_001247_210--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30044 16.2785 28.8811 13.9524 2.38602 2.66725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14434 3.46975 2.62087 6.7812 9.32555

CAGE analysis