Hb_002249_180

Information

Type transcription factor
Description TF Family: ERF
Location Contig2249: 189128-190819
Sequence    

Annotation

kegg
ID rcu:RCOM_1503380
description DNA binding protein, putative
nr
ID XP_002511085.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FH54
description Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=1 SV=1
trembl
ID B9RA60
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1503380 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf113

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_180 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_000828_020 0.0696038543 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_009026_040 0.070553383 - - pathogenesis-related family protein [Populus trichocarpa]
4 Hb_001948_040 0.0707817015 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
5 Hb_003073_020 0.0785485838 - - protein binding protein, putative [Ricinus communis]
6 Hb_039363_010 0.079286524 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
7 Hb_004267_050 0.0849275826 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
8 Hb_004190_030 0.0871464776 - - unnamed protein product [Vitis vinifera]
9 Hb_000221_200 0.0884702362 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
10 Hb_005433_050 0.0903966826 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
11 Hb_001140_330 0.0904898342 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
12 Hb_000563_060 0.0909116645 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
13 Hb_000712_060 0.0918636967 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
14 Hb_002835_020 0.0926558734 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
15 Hb_003119_110 0.093276967 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
16 Hb_038238_010 0.0938949492 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
17 Hb_000388_160 0.0953796471 - - xyloglucan endo-1 family protein [Populus trichocarpa]
18 Hb_109163_010 0.0973558963 - - polyphenol oxidase [Hevea brasiliensis]
19 Hb_006415_020 0.0979199504 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
20 Hb_106528_020 0.0987709166 - - Cationic peroxidase 2 precursor [Theobroma cacao]

Gene co-expression network

sample Hb_002249_180 Hb_002249_180 Hb_000828_020 Hb_000828_020 Hb_002249_180--Hb_000828_020 Hb_009026_040 Hb_009026_040 Hb_002249_180--Hb_009026_040 Hb_001948_040 Hb_001948_040 Hb_002249_180--Hb_001948_040 Hb_003073_020 Hb_003073_020 Hb_002249_180--Hb_003073_020 Hb_039363_010 Hb_039363_010 Hb_002249_180--Hb_039363_010 Hb_004267_050 Hb_004267_050 Hb_002249_180--Hb_004267_050 Hb_000221_200 Hb_000221_200 Hb_000828_020--Hb_000221_200 Hb_000828_020--Hb_001948_040 Hb_000712_060 Hb_000712_060 Hb_000828_020--Hb_000712_060 Hb_000828_020--Hb_009026_040 Hb_000828_020--Hb_003073_020 Hb_009026_040--Hb_001948_040 Hb_080238_010 Hb_080238_010 Hb_009026_040--Hb_080238_010 Hb_009026_040--Hb_000221_200 Hb_000329_160 Hb_000329_160 Hb_009026_040--Hb_000329_160 Hb_001948_040--Hb_000221_200 Hb_001948_040--Hb_000712_060 Hb_001948_040--Hb_080238_010 Hb_032717_030 Hb_032717_030 Hb_003073_020--Hb_032717_030 Hb_023732_020 Hb_023732_020 Hb_003073_020--Hb_023732_020 Hb_003073_020--Hb_039363_010 Hb_002835_020 Hb_002835_020 Hb_003073_020--Hb_002835_020 Hb_005433_050 Hb_005433_050 Hb_003073_020--Hb_005433_050 Hb_039363_010--Hb_002835_020 Hb_000563_060 Hb_000563_060 Hb_039363_010--Hb_000563_060 Hb_000388_160 Hb_000388_160 Hb_039363_010--Hb_000388_160 Hb_109163_010 Hb_109163_010 Hb_039363_010--Hb_109163_010 Hb_153208_010 Hb_153208_010 Hb_039363_010--Hb_153208_010 Hb_004190_030 Hb_004190_030 Hb_039363_010--Hb_004190_030 Hb_004267_050--Hb_004190_030 Hb_001140_330 Hb_001140_330 Hb_004267_050--Hb_001140_330 Hb_003119_110 Hb_003119_110 Hb_004267_050--Hb_003119_110 Hb_004267_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_004267_050--Hb_002944_020 Hb_010358_010 Hb_010358_010 Hb_004267_050--Hb_010358_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0403465 0 0.0263935 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0291005 0 6.03025 0.0604742

CAGE analysis