Hb_002249_210

Information

Type -
Description -
Location Contig2249: 213291-214165
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_210 0.0 - - -
2 Hb_011574_010 0.1604920473 - - -
3 Hb_023675_030 0.2130485946 - - -
4 Hb_003038_150 0.2138577758 - - -
5 Hb_000703_300 0.2279156573 - - -
6 Hb_000330_080 0.2350606723 - - auxilin, putative [Ricinus communis]
7 Hb_008123_010 0.2409266465 - - -
8 Hb_001031_050 0.2615553545 - - -
9 Hb_001488_260 0.2635249643 - - Alpha-2-macroglobulin [Gossypium arboreum]
10 Hb_012165_020 0.2690683958 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
11 Hb_007313_060 0.2699478366 - - PREDICTED: paramyosin [Jatropha curcas]
12 Hb_008092_080 0.273241461 - - elongation factor ts, putative [Ricinus communis]
13 Hb_001709_130 0.2798998228 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_002276_070 0.2808287361 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
15 Hb_005656_150 0.2847873526 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
16 Hb_012184_030 0.2850345404 - - -
17 Hb_105581_010 0.28873078 - - hypothetical protein, partial [Pseudomonas fluorescens]
18 Hb_143629_060 0.289904749 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
19 Hb_003626_080 0.2900864269 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000078_170 0.294669114 - - -

Gene co-expression network

sample Hb_002249_210 Hb_002249_210 Hb_011574_010 Hb_011574_010 Hb_002249_210--Hb_011574_010 Hb_023675_030 Hb_023675_030 Hb_002249_210--Hb_023675_030 Hb_003038_150 Hb_003038_150 Hb_002249_210--Hb_003038_150 Hb_000703_300 Hb_000703_300 Hb_002249_210--Hb_000703_300 Hb_000330_080 Hb_000330_080 Hb_002249_210--Hb_000330_080 Hb_008123_010 Hb_008123_010 Hb_002249_210--Hb_008123_010 Hb_011574_010--Hb_003038_150 Hb_011574_010--Hb_000703_300 Hb_005656_150 Hb_005656_150 Hb_011574_010--Hb_005656_150 Hb_011574_010--Hb_023675_030 Hb_001488_260 Hb_001488_260 Hb_011574_010--Hb_001488_260 Hb_023675_030--Hb_003038_150 Hb_001461_020 Hb_001461_020 Hb_023675_030--Hb_001461_020 Hb_007313_060 Hb_007313_060 Hb_023675_030--Hb_007313_060 Hb_023675_030--Hb_000703_300 Hb_032733_010 Hb_032733_010 Hb_023675_030--Hb_032733_010 Hb_003038_150--Hb_000703_300 Hb_000236_450 Hb_000236_450 Hb_003038_150--Hb_000236_450 Hb_003038_150--Hb_008123_010 Hb_001766_040 Hb_001766_040 Hb_000703_300--Hb_001766_040 Hb_000703_300--Hb_001488_260 Hb_001366_160 Hb_001366_160 Hb_000703_300--Hb_001366_160 Hb_000078_170 Hb_000078_170 Hb_000703_300--Hb_000078_170 Hb_000703_300--Hb_000330_080 Hb_032920_100 Hb_032920_100 Hb_000330_080--Hb_032920_100 Hb_000330_080--Hb_000078_170 Hb_001709_130 Hb_001709_130 Hb_000330_080--Hb_001709_130 Hb_000330_080--Hb_008123_010 Hb_004884_020 Hb_004884_020 Hb_000330_080--Hb_004884_020 Hb_003058_020 Hb_003058_020 Hb_000330_080--Hb_003058_020 Hb_090530_010 Hb_090530_010 Hb_008123_010--Hb_090530_010 Hb_011616_020 Hb_011616_020 Hb_008123_010--Hb_011616_020 Hb_031658_040 Hb_031658_040 Hb_008123_010--Hb_031658_040 Hb_002276_070 Hb_002276_070 Hb_008123_010--Hb_002276_070 Hb_007313_100 Hb_007313_100 Hb_008123_010--Hb_007313_100 Hb_002495_060 Hb_002495_060 Hb_008123_010--Hb_002495_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.500532 0.168575 0.0754709 0.201794 0.925275 0.436218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.154558 2.44248

CAGE analysis