Hb_002252_030

Information

Type -
Description -
Location Contig2252: 30549-37025
Sequence    

Annotation

kegg
ID cic:CICLE_v10027269mg
description hypothetical protein
nr
ID KDP37317.1
description hypothetical protein JCGZ_06771 [Jatropha curcas]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID A0A067KMI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06771 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002252_030 0.0 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
2 Hb_047955_010 0.0850606928 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
3 Hb_157957_010 0.0871425275 - - hypothetical protein JCGZ_10722 [Jatropha curcas]
4 Hb_000359_230 0.0887150489 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
5 Hb_002548_030 0.0906460978 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
6 Hb_010477_020 0.0917265171 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
7 Hb_034581_010 0.0967961767 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
8 Hb_110356_010 0.0970834878 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
9 Hb_027506_060 0.1045151694 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
10 Hb_000032_150 0.107699678 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
11 Hb_125201_010 0.1093677777 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
12 Hb_012264_010 0.1118255434 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_005618_020 0.1134341735 - - hypothetical protein RCOM_1342750 [Ricinus communis]
14 Hb_000086_600 0.1171839961 - - -
15 Hb_000338_020 0.1172114466 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
16 Hb_106810_010 0.1234245833 - - receptor serine/threonine kinase, putative [Ricinus communis]
17 Hb_124953_010 0.1239650013 - - hypothetical protein RCOM_1314600 [Ricinus communis]
18 Hb_001257_040 0.124490943 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
19 Hb_003207_230 0.1249173731 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
20 Hb_099188_010 0.1268606941 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_002252_030 Hb_002252_030 Hb_047955_010 Hb_047955_010 Hb_002252_030--Hb_047955_010 Hb_157957_010 Hb_157957_010 Hb_002252_030--Hb_157957_010 Hb_000359_230 Hb_000359_230 Hb_002252_030--Hb_000359_230 Hb_002548_030 Hb_002548_030 Hb_002252_030--Hb_002548_030 Hb_010477_020 Hb_010477_020 Hb_002252_030--Hb_010477_020 Hb_034581_010 Hb_034581_010 Hb_002252_030--Hb_034581_010 Hb_000032_150 Hb_000032_150 Hb_047955_010--Hb_000032_150 Hb_003207_230 Hb_003207_230 Hb_047955_010--Hb_003207_230 Hb_047955_010--Hb_000359_230 Hb_124953_010 Hb_124953_010 Hb_047955_010--Hb_124953_010 Hb_047955_010--Hb_157957_010 Hb_157957_010--Hb_034581_010 Hb_036754_040 Hb_036754_040 Hb_157957_010--Hb_036754_040 Hb_110356_010 Hb_110356_010 Hb_157957_010--Hb_110356_010 Hb_157957_010--Hb_000359_230 Hb_157957_010--Hb_002548_030 Hb_064692_010 Hb_064692_010 Hb_157957_010--Hb_064692_010 Hb_000359_230--Hb_002548_030 Hb_000359_230--Hb_110356_010 Hb_099188_010 Hb_099188_010 Hb_000359_230--Hb_099188_010 Hb_000359_230--Hb_034581_010 Hb_001677_140 Hb_001677_140 Hb_000359_230--Hb_001677_140 Hb_128851_020 Hb_128851_020 Hb_000359_230--Hb_128851_020 Hb_002548_030--Hb_110356_010 Hb_002548_030--Hb_099188_010 Hb_002548_030--Hb_034581_010 Hb_002548_030--Hb_001677_140 Hb_002548_030--Hb_128851_020 Hb_010477_020--Hb_002548_030 Hb_010477_020--Hb_000359_230 Hb_010477_020--Hb_034581_010 Hb_010477_020--Hb_110356_010 Hb_010477_020--Hb_099188_010 Hb_034581_010--Hb_110356_010 Hb_034581_010--Hb_001677_140 Hb_034581_010--Hb_036754_040 Hb_010136_020 Hb_010136_020 Hb_034581_010--Hb_010136_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0119371 1.67247 0.573889 0.276329 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis