Hb_002253_040

Information

Type -
Description -
Location Contig2253: 74519-86278
Sequence    

Annotation

kegg
ID rcu:RCOM_1463010
description transcription regulator, putative
nr
ID XP_012066571.1
description PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID A0A067L2A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24380 PE=4 SV=1
Gene Ontology
ID GO:0005886
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002253_040 0.0 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
2 Hb_004109_060 0.092479958 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
3 Hb_001818_080 0.1034070838 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
4 Hb_001158_220 0.1037960851 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
5 Hb_031091_010 0.111677156 - - crooked neck protein, putative [Ricinus communis]
6 Hb_007643_050 0.1123716169 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000116_110 0.1128580132 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
8 Hb_000866_030 0.1131347875 - - hypothetical protein RCOM_1615820 [Ricinus communis]
9 Hb_000088_020 0.1142828241 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
10 Hb_031862_180 0.1151397584 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
11 Hb_017259_010 0.1151599605 - - -
12 Hb_000349_060 0.116864508 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
13 Hb_187739_020 0.1190982731 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_005432_010 0.1195614502 - - -
15 Hb_002716_140 0.1205812306 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
16 Hb_173178_020 0.123542217 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
17 Hb_000521_020 0.1259713852 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
18 Hb_001616_090 0.1259859106 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
19 Hb_002475_160 0.1263739459 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
20 Hb_000186_280 0.1277287522 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002253_040 Hb_002253_040 Hb_004109_060 Hb_004109_060 Hb_002253_040--Hb_004109_060 Hb_001818_080 Hb_001818_080 Hb_002253_040--Hb_001818_080 Hb_001158_220 Hb_001158_220 Hb_002253_040--Hb_001158_220 Hb_031091_010 Hb_031091_010 Hb_002253_040--Hb_031091_010 Hb_007643_050 Hb_007643_050 Hb_002253_040--Hb_007643_050 Hb_000116_110 Hb_000116_110 Hb_002253_040--Hb_000116_110 Hb_017259_010 Hb_017259_010 Hb_004109_060--Hb_017259_010 Hb_009838_130 Hb_009838_130 Hb_004109_060--Hb_009838_130 Hb_001754_170 Hb_001754_170 Hb_004109_060--Hb_001754_170 Hb_000107_170 Hb_000107_170 Hb_004109_060--Hb_000107_170 Hb_001616_090 Hb_001616_090 Hb_004109_060--Hb_001616_090 Hb_030312_040 Hb_030312_040 Hb_001818_080--Hb_030312_040 Hb_061908_010 Hb_061908_010 Hb_001818_080--Hb_061908_010 Hb_002232_170 Hb_002232_170 Hb_001818_080--Hb_002232_170 Hb_004374_200 Hb_004374_200 Hb_001818_080--Hb_004374_200 Hb_005565_030 Hb_005565_030 Hb_001818_080--Hb_005565_030 Hb_015941_030 Hb_015941_030 Hb_001818_080--Hb_015941_030 Hb_005016_170 Hb_005016_170 Hb_001158_220--Hb_005016_170 Hb_002475_160 Hb_002475_160 Hb_001158_220--Hb_002475_160 Hb_001158_220--Hb_007643_050 Hb_001158_220--Hb_061908_010 Hb_002107_160 Hb_002107_160 Hb_001158_220--Hb_002107_160 Hb_001380_020 Hb_001380_020 Hb_001158_220--Hb_001380_020 Hb_008695_120 Hb_008695_120 Hb_031091_010--Hb_008695_120 Hb_031091_010--Hb_001616_090 Hb_002716_140 Hb_002716_140 Hb_031091_010--Hb_002716_140 Hb_000322_100 Hb_000322_100 Hb_031091_010--Hb_000322_100 Hb_003581_120 Hb_003581_120 Hb_031091_010--Hb_003581_120 Hb_031091_010--Hb_007643_050 Hb_007643_050--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007643_050--Hb_011942_080 Hb_007643_050--Hb_001616_090 Hb_007643_050--Hb_000116_110 Hb_012305_070 Hb_012305_070 Hb_000116_110--Hb_012305_070 Hb_000116_110--Hb_015941_030 Hb_000116_110--Hb_002475_160 Hb_000236_370 Hb_000236_370 Hb_000116_110--Hb_000236_370 Hb_000265_150 Hb_000265_150 Hb_000116_110--Hb_000265_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17918 0.629727 0.225556 0.499487 0.729104 1.69806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.778999 0.795588 0.273826 0.181196 0.166555

CAGE analysis