Hb_002253_060

Information

Type -
Description -
Location Contig2253: 116759-118859
Sequence    

Annotation

kegg
ID rcu:RCOM_1461910
description hypothetical protein
nr
ID XP_002517263.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RU44
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1461910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23436: 116846-118844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002253_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_013766_010 0.22293982 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
3 Hb_001720_060 0.2340522546 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
4 Hb_004291_010 0.2474114815 - - (R)-limonene synthase, putative [Ricinus communis]
5 Hb_003106_120 0.2729255883 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
6 Hb_001079_020 0.2731931287 - - hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
7 Hb_000836_490 0.2789302555 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
8 Hb_150818_020 0.2811084755 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
9 Hb_008289_050 0.2838557504 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
10 Hb_006420_090 0.2881255731 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
11 Hb_000260_290 0.2884927906 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
12 Hb_002805_020 0.2958618804 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
13 Hb_003052_220 0.300398118 - - -
14 Hb_027472_230 0.3030322672 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
15 Hb_004195_180 0.3080925469 - - unnamed protein product [Coffea canephora]
16 Hb_007218_100 0.3089409699 - - phosphofructokinase [Hevea brasiliensis]
17 Hb_004208_130 0.3089504709 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
18 Hb_000223_180 0.3098848652 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
19 Hb_008516_040 0.3103928429 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002486_010 0.3112689949 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002253_060 Hb_002253_060 Hb_013766_010 Hb_013766_010 Hb_002253_060--Hb_013766_010 Hb_001720_060 Hb_001720_060 Hb_002253_060--Hb_001720_060 Hb_004291_010 Hb_004291_010 Hb_002253_060--Hb_004291_010 Hb_003106_120 Hb_003106_120 Hb_002253_060--Hb_003106_120 Hb_001079_020 Hb_001079_020 Hb_002253_060--Hb_001079_020 Hb_000836_490 Hb_000836_490 Hb_002253_060--Hb_000836_490 Hb_002486_010 Hb_002486_010 Hb_013766_010--Hb_002486_010 Hb_007747_180 Hb_007747_180 Hb_013766_010--Hb_007747_180 Hb_001565_110 Hb_001565_110 Hb_013766_010--Hb_001565_110 Hb_013766_010--Hb_001079_020 Hb_082182_010 Hb_082182_010 Hb_013766_010--Hb_082182_010 Hb_008289_050 Hb_008289_050 Hb_001720_060--Hb_008289_050 Hb_027472_230 Hb_027472_230 Hb_001720_060--Hb_027472_230 Hb_004195_180 Hb_004195_180 Hb_001720_060--Hb_004195_180 Hb_003435_060 Hb_003435_060 Hb_001720_060--Hb_003435_060 Hb_004460_050 Hb_004460_050 Hb_001720_060--Hb_004460_050 Hb_017134_010 Hb_017134_010 Hb_004291_010--Hb_017134_010 Hb_001579_140 Hb_001579_140 Hb_004291_010--Hb_001579_140 Hb_004064_020 Hb_004064_020 Hb_004291_010--Hb_004064_020 Hb_002151_050 Hb_002151_050 Hb_004291_010--Hb_002151_050 Hb_003913_080 Hb_003913_080 Hb_004291_010--Hb_003913_080 Hb_012239_100 Hb_012239_100 Hb_004291_010--Hb_012239_100 Hb_003106_120--Hb_002486_010 Hb_003106_120--Hb_013766_010 Hb_003106_120--Hb_003435_060 Hb_003106_120--Hb_001565_110 Hb_003106_120--Hb_007747_180 Hb_002805_020 Hb_002805_020 Hb_001079_020--Hb_002805_020 Hb_001079_020--Hb_002486_010 Hb_006420_090 Hb_006420_090 Hb_001079_020--Hb_006420_090 Hb_105328_030 Hb_105328_030 Hb_001079_020--Hb_105328_030 Hb_007885_050 Hb_007885_050 Hb_000836_490--Hb_007885_050 Hb_003777_360 Hb_003777_360 Hb_000836_490--Hb_003777_360 Hb_000594_090 Hb_000594_090 Hb_000836_490--Hb_000594_090 Hb_004208_130 Hb_004208_130 Hb_000836_490--Hb_004208_130 Hb_028271_020 Hb_028271_020 Hb_000836_490--Hb_028271_020 Hb_000117_100 Hb_000117_100 Hb_000836_490--Hb_000117_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.397599 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.404731 0.957167 0.446311 1.03952 0

CAGE analysis