Hb_002253_070

Information

Type transcription factor
Description TF Family: NAC
Location Contig2253: 119664-122630
Sequence    

Annotation

kegg
ID cit:102616225
description NAC domain-containing protein 74-like
nr
ID AGL39698.1
description NAC transcription factor 042 [Jatropha curcas]
swissprot
ID Q84K00
description NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2
trembl
ID R4N7M8
description NAC transcription factor 042 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23437: 119732-121931 , PASA_asmbl_23438: 119732-121931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002253_070 0.0 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
2 Hb_003032_040 0.0755551327 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
3 Hb_026527_030 0.0758715269 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
4 Hb_005062_070 0.0808385847 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
5 Hb_000429_170 0.0823169046 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
6 Hb_001604_010 0.0827881629 - - 14-3-3 protein, putative [Ricinus communis]
7 Hb_001454_210 0.0837827731 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
8 Hb_000107_620 0.0849810767 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
9 Hb_001776_110 0.0852341184 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
10 Hb_001277_330 0.0886222279 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
11 Hb_011571_010 0.0890731342 - - Metal tolerance protein C4, putative [Ricinus communis]
12 Hb_003732_020 0.0918104878 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
13 Hb_004812_010 0.0930712556 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
14 Hb_006400_030 0.0936413432 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
15 Hb_112798_030 0.0936712215 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002496_050 0.0938155456 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
17 Hb_000029_030 0.0952792168 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
18 Hb_000030_010 0.0958814804 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
19 Hb_000190_140 0.0966980797 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
20 Hb_007508_070 0.0971237814 - - glycine-rich RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002253_070 Hb_002253_070 Hb_003032_040 Hb_003032_040 Hb_002253_070--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_002253_070--Hb_026527_030 Hb_005062_070 Hb_005062_070 Hb_002253_070--Hb_005062_070 Hb_000429_170 Hb_000429_170 Hb_002253_070--Hb_000429_170 Hb_001604_010 Hb_001604_010 Hb_002253_070--Hb_001604_010 Hb_001454_210 Hb_001454_210 Hb_002253_070--Hb_001454_210 Hb_001818_090 Hb_001818_090 Hb_003032_040--Hb_001818_090 Hb_006400_030 Hb_006400_030 Hb_003032_040--Hb_006400_030 Hb_006400_060 Hb_006400_060 Hb_003032_040--Hb_006400_060 Hb_000483_200 Hb_000483_200 Hb_003032_040--Hb_000483_200 Hb_024185_020 Hb_024185_020 Hb_003032_040--Hb_024185_020 Hb_002449_020 Hb_002449_020 Hb_003032_040--Hb_002449_020 Hb_000331_080 Hb_000331_080 Hb_026527_030--Hb_000331_080 Hb_026527_030--Hb_024185_020 Hb_009954_040 Hb_009954_040 Hb_026527_030--Hb_009954_040 Hb_004994_100 Hb_004994_100 Hb_026527_030--Hb_004994_100 Hb_002685_020 Hb_002685_020 Hb_026527_030--Hb_002685_020 Hb_005062_070--Hb_001454_210 Hb_001030_120 Hb_001030_120 Hb_005062_070--Hb_001030_120 Hb_004046_010 Hb_004046_010 Hb_005062_070--Hb_004046_010 Hb_000030_010 Hb_000030_010 Hb_005062_070--Hb_000030_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_009111_050 Hb_009111_050 Hb_005062_070--Hb_009111_050 Hb_007924_020 Hb_007924_020 Hb_000429_170--Hb_007924_020 Hb_034299_060 Hb_034299_060 Hb_000429_170--Hb_034299_060 Hb_000622_040 Hb_000622_040 Hb_000429_170--Hb_000622_040 Hb_003151_050 Hb_003151_050 Hb_000429_170--Hb_003151_050 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_007441_120 Hb_007441_120 Hb_001604_010--Hb_007441_120 Hb_015746_010 Hb_015746_010 Hb_001604_010--Hb_015746_010 Hb_028872_140 Hb_028872_140 Hb_001604_010--Hb_028872_140 Hb_001248_130 Hb_001248_130 Hb_001604_010--Hb_001248_130 Hb_000120_950 Hb_000120_950 Hb_001604_010--Hb_000120_950 Hb_001584_330 Hb_001584_330 Hb_001604_010--Hb_001584_330 Hb_015306_020 Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_001454_210--Hb_028872_140 Hb_001454_210--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_001454_210--Hb_002811_360 Hb_001454_210--Hb_001030_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.4091 10.7327 12.3922 10.4793 33.4978 32.124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.9585 36.588 47.0652 21.2471 15.8179

CAGE analysis