Hb_002253_110

Information

Type -
Description -
Location Contig2253: 159550-163238
Sequence    

Annotation

kegg
ID rcu:RCOM_1461070
description cysteine desulfurylase, putative (EC:2.8.1.7)
nr
ID XP_002517249.1
description cysteine desulfurylase, putative [Ricinus communis]
swissprot
ID P99177
description Probable cysteine desulfurase OS=Staphylococcus aureus (strain N315) GN=csd PE=1 SV=1
trembl
ID B9RU30
description Cysteine desulfurylase, putative OS=Ricinus communis GN=RCOM_1461070 PE=3 SV=1
Gene Ontology
ID GO:0008483
description chloroplastic nifs-like cysteine desulfurase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23448: 159603-163080 , PASA_asmbl_23449: 159603-163072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002253_110 0.0 - - cysteine desulfurylase, putative [Ricinus communis]
2 Hb_003360_020 0.1304892086 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
3 Hb_002769_040 0.1323334099 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
4 Hb_000856_100 0.1343758692 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
5 Hb_000033_060 0.1381540782 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
6 Hb_009193_130 0.142552469 - - hypothetical protein RCOM_1620550 [Ricinus communis]
7 Hb_000117_020 0.143576087 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_103351_010 0.1469476522 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
9 Hb_074961_010 0.151422632 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
10 Hb_029464_010 0.1530042404 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
11 Hb_005271_030 0.1530963311 - - copper-transporting atpase p-type, putative [Ricinus communis]
12 Hb_002506_110 0.1618769788 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
13 Hb_001668_030 0.1657058778 - - conserved hypothetical protein [Ricinus communis]
14 Hb_098315_100 0.1683931921 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
15 Hb_003540_140 0.1691243021 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
16 Hb_000466_060 0.1700316856 - - phosphofructokinase [Hevea brasiliensis]
17 Hb_077219_010 0.1711929979 - - conserved hypothetical protein [Ricinus communis]
18 Hb_124587_010 0.1723182893 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
19 Hb_000441_230 0.1763691605 - - unnamed protein product [Coffea canephora]
20 Hb_003226_170 0.1766769351 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002253_110 Hb_002253_110 Hb_003360_020 Hb_003360_020 Hb_002253_110--Hb_003360_020 Hb_002769_040 Hb_002769_040 Hb_002253_110--Hb_002769_040 Hb_000856_100 Hb_000856_100 Hb_002253_110--Hb_000856_100 Hb_000033_060 Hb_000033_060 Hb_002253_110--Hb_000033_060 Hb_009193_130 Hb_009193_130 Hb_002253_110--Hb_009193_130 Hb_000117_020 Hb_000117_020 Hb_002253_110--Hb_000117_020 Hb_000441_230 Hb_000441_230 Hb_003360_020--Hb_000441_230 Hb_002506_110 Hb_002506_110 Hb_003360_020--Hb_002506_110 Hb_000580_060 Hb_000580_060 Hb_003360_020--Hb_000580_060 Hb_003360_020--Hb_000033_060 Hb_010290_020 Hb_010290_020 Hb_003360_020--Hb_010290_020 Hb_003540_140 Hb_003540_140 Hb_002769_040--Hb_003540_140 Hb_061256_030 Hb_061256_030 Hb_002769_040--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_002769_040--Hb_003226_170 Hb_077219_010 Hb_077219_010 Hb_002769_040--Hb_077219_010 Hb_005271_030 Hb_005271_030 Hb_002769_040--Hb_005271_030 Hb_098315_100 Hb_098315_100 Hb_000856_100--Hb_098315_100 Hb_000856_100--Hb_009193_130 Hb_000856_100--Hb_002506_110 Hb_019654_070 Hb_019654_070 Hb_000856_100--Hb_019654_070 Hb_000856_100--Hb_005271_030 Hb_000155_080 Hb_000155_080 Hb_000856_100--Hb_000155_080 Hb_000033_060--Hb_009193_130 Hb_002627_060 Hb_002627_060 Hb_000033_060--Hb_002627_060 Hb_000033_060--Hb_000856_100 Hb_000033_060--Hb_098315_100 Hb_000033_060--Hb_002506_110 Hb_029464_010 Hb_029464_010 Hb_009193_130--Hb_029464_010 Hb_007158_030 Hb_007158_030 Hb_009193_130--Hb_007158_030 Hb_009193_130--Hb_005271_030 Hb_009193_130--Hb_098315_100 Hb_009193_130--Hb_002506_110 Hb_074961_010 Hb_074961_010 Hb_000117_020--Hb_074961_010 Hb_103351_010 Hb_103351_010 Hb_000117_020--Hb_103351_010 Hb_000117_010 Hb_000117_010 Hb_000117_020--Hb_000117_010 Hb_124587_010 Hb_124587_010 Hb_000117_020--Hb_124587_010 Hb_000707_070 Hb_000707_070 Hb_000117_020--Hb_000707_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
430.977 7.37042 1.81746 30.3597 467.758 971.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
190.135 38.8417 145.792 20.5812 2.5607

CAGE analysis