Hb_002255_030

Information

Type -
Description -
Location Contig2255: 17767-19860
Sequence    

Annotation

kegg
ID rcu:RCOM_0574490
description hypothetical protein
nr
ID XP_012066186.1
description PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
swissprot
ID Q54J07
description INO80 complex subunit D OS=Dictyostelium discoideum GN=DDB_G0288447 PE=3 SV=1
trembl
ID A0A067L341
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23764 PE=4 SV=1
Gene Ontology
ID GO:0000123
description ino80 complex subunit d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23450: 17685-19721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002255_030 0.0 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
2 Hb_000023_330 0.0580406286 - - RNA recognition motif-containing family protein [Populus trichocarpa]
3 Hb_063716_080 0.0691484661 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
4 Hb_003680_150 0.0706677241 - - srpk, putative [Ricinus communis]
5 Hb_000347_180 0.0724556101 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
6 Hb_002045_240 0.0781565806 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
7 Hb_000574_540 0.0789037088 - - ATP binding protein, putative [Ricinus communis]
8 Hb_100215_010 0.079021954 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
9 Hb_000457_260 0.0800937106 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
10 Hb_004935_030 0.0805066679 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
11 Hb_003641_060 0.0805722927 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
12 Hb_004577_020 0.0819727373 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
13 Hb_000173_490 0.0822249204 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
14 Hb_004881_020 0.0824346727 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
15 Hb_004689_050 0.0826536989 - - conserved hypothetical protein [Ricinus communis]
16 Hb_023386_040 0.082800668 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
17 Hb_003362_070 0.0831848865 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
18 Hb_007576_110 0.0841035112 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
19 Hb_016898_010 0.0843518209 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
20 Hb_008159_020 0.0845334084 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_002255_030 Hb_002255_030 Hb_000023_330 Hb_000023_330 Hb_002255_030--Hb_000023_330 Hb_063716_080 Hb_063716_080 Hb_002255_030--Hb_063716_080 Hb_003680_150 Hb_003680_150 Hb_002255_030--Hb_003680_150 Hb_000347_180 Hb_000347_180 Hb_002255_030--Hb_000347_180 Hb_002045_240 Hb_002045_240 Hb_002255_030--Hb_002045_240 Hb_000574_540 Hb_000574_540 Hb_002255_030--Hb_000574_540 Hb_000023_330--Hb_003680_150 Hb_004954_070 Hb_004954_070 Hb_000023_330--Hb_004954_070 Hb_023386_040 Hb_023386_040 Hb_000023_330--Hb_023386_040 Hb_016898_010 Hb_016898_010 Hb_000023_330--Hb_016898_010 Hb_009486_180 Hb_009486_180 Hb_000023_330--Hb_009486_180 Hb_003641_060 Hb_003641_060 Hb_063716_080--Hb_003641_060 Hb_002960_160 Hb_002960_160 Hb_063716_080--Hb_002960_160 Hb_012180_050 Hb_012180_050 Hb_063716_080--Hb_012180_050 Hb_080313_010 Hb_080313_010 Hb_063716_080--Hb_080313_010 Hb_003935_030 Hb_003935_030 Hb_063716_080--Hb_003935_030 Hb_002823_030 Hb_002823_030 Hb_003680_150--Hb_002823_030 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_003680_150--Hb_014361_070 Hb_000853_230 Hb_000853_230 Hb_003680_150--Hb_000853_230 Hb_023480_010 Hb_023480_010 Hb_003680_150--Hb_023480_010 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030 Hb_000457_260 Hb_000457_260 Hb_000347_180--Hb_000457_260 Hb_001097_050 Hb_001097_050 Hb_000347_180--Hb_001097_050 Hb_123352_020 Hb_123352_020 Hb_000347_180--Hb_123352_020 Hb_004935_030 Hb_004935_030 Hb_000347_180--Hb_004935_030 Hb_001377_270 Hb_001377_270 Hb_000347_180--Hb_001377_270 Hb_008643_210 Hb_008643_210 Hb_002045_240--Hb_008643_210 Hb_154745_010 Hb_154745_010 Hb_002045_240--Hb_154745_010 Hb_002045_240--Hb_023386_040 Hb_006252_040 Hb_006252_040 Hb_002045_240--Hb_006252_040 Hb_002045_240--Hb_001097_050 Hb_002045_240--Hb_023480_010 Hb_000092_020 Hb_000092_020 Hb_000574_540--Hb_000092_020 Hb_001638_270 Hb_001638_270 Hb_000574_540--Hb_001638_270 Hb_000003_190 Hb_000003_190 Hb_000574_540--Hb_000003_190 Hb_000366_120 Hb_000366_120 Hb_000574_540--Hb_000366_120 Hb_002872_040 Hb_002872_040 Hb_000574_540--Hb_002872_040 Hb_001080_230 Hb_001080_230 Hb_000574_540--Hb_001080_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.158 14.5329 6.21353 10.1711 12.1434 18.6645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2002 9.49405 7.95468 12.7846 7.69564

CAGE analysis