Hb_002255_050

Information

Type -
Description -
Location Contig2255: 32602-53074
Sequence    

Annotation

kegg
ID rcu:RCOM_0574620
description isoleucyl tRNA synthetase, putative (EC:6.1.1.5)
nr
ID XP_012075814.1
description PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID Q54YD4
description Probable isoleucine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=ileS PE=3 SV=1
trembl
ID A0A067KSI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10564 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable isoleucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23451: 33019-72596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002255_050 0.0 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_000283_070 0.0621917359 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
3 Hb_006831_110 0.0631113602 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
4 Hb_022408_010 0.0649294269 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
5 Hb_002221_050 0.0696227442 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
6 Hb_009627_010 0.0702310577 - - Protein dom-3, putative [Ricinus communis]
7 Hb_000645_120 0.0711775601 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
8 Hb_006449_050 0.0714356682 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
9 Hb_008864_110 0.0719116756 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
10 Hb_001541_020 0.0719393009 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
11 Hb_001599_030 0.0742712513 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
12 Hb_000107_500 0.0743742369 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
13 Hb_002304_090 0.0752524754 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
14 Hb_140171_010 0.0754020261 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
15 Hb_000510_310 0.0758032195 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
16 Hb_000173_510 0.0768047971 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
17 Hb_000236_380 0.0790001887 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_000320_200 0.0790882571 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
19 Hb_009411_010 0.0798997366 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
20 Hb_000244_250 0.079912074 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002255_050 Hb_002255_050 Hb_000283_070 Hb_000283_070 Hb_002255_050--Hb_000283_070 Hb_006831_110 Hb_006831_110 Hb_002255_050--Hb_006831_110 Hb_022408_010 Hb_022408_010 Hb_002255_050--Hb_022408_010 Hb_002221_050 Hb_002221_050 Hb_002255_050--Hb_002221_050 Hb_009627_010 Hb_009627_010 Hb_002255_050--Hb_009627_010 Hb_000645_120 Hb_000645_120 Hb_002255_050--Hb_000645_120 Hb_000107_500 Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_000283_070--Hb_000645_120 Hb_000283_070--Hb_006831_110 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_002042_140 Hb_002042_140 Hb_006831_110--Hb_002042_140 Hb_005321_020 Hb_005321_020 Hb_006831_110--Hb_005321_020 Hb_009620_050 Hb_009620_050 Hb_006831_110--Hb_009620_050 Hb_006831_110--Hb_000107_500 Hb_001541_020 Hb_001541_020 Hb_022408_010--Hb_001541_020 Hb_000244_250 Hb_000244_250 Hb_022408_010--Hb_000244_250 Hb_022408_010--Hb_002221_050 Hb_000424_010 Hb_000424_010 Hb_022408_010--Hb_000424_010 Hb_022408_010--Hb_000107_500 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_002221_050--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_002221_050--Hb_007885_070 Hb_000529_260 Hb_000529_260 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_001140_350 Hb_001140_350 Hb_000645_120--Hb_001140_350 Hb_008864_110 Hb_008864_110 Hb_000645_120--Hb_008864_110 Hb_000645_120--Hb_005321_020 Hb_000510_310 Hb_000510_310 Hb_000645_120--Hb_000510_310 Hb_003124_130 Hb_003124_130 Hb_000645_120--Hb_003124_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7587 8.49898 6.13206 6.48576 16.2803 15.4998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.75399 4.42308 10.9557 7.53772 5.45032

CAGE analysis