Hb_002255_070

Information

Type -
Description -
Location Contig2255: 64110-72508
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G075600g
description hypothetical protein
nr
ID XP_010456842.1
description PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
swissprot
ID Q8SQV6
description Probable isoleucine--tRNA ligase, cytoplasmic OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU11_1100 PE=3 SV=1
trembl
ID V7AJE0
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G075600g PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable isoleucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23451: 33019-72596
cDNA
(Sanger)
(ID:Location)		 052_J06.ab1: 72028-72596

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002255_070 0.0 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
2 Hb_126643_010 0.0755015212 - - Protein transport protein Sec24C, putative [Ricinus communis]
3 Hb_000627_080 0.0812272124 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
4 Hb_000005_380 0.0898671141 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
5 Hb_000390_070 0.0916448648 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
6 Hb_001930_010 0.0933734429 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
7 Hb_000514_060 0.0940751231 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
8 Hb_002255_050 0.0960421142 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_022408_010 0.0967498817 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
10 Hb_005730_030 0.1012982953 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
11 Hb_140171_010 0.1016805457 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
12 Hb_000244_250 0.1038959459 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
13 Hb_123777_030 0.1041438417 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
14 Hb_033834_010 0.1041771525 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_148909_010 0.1058553751 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
16 Hb_003544_100 0.1099098824 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
17 Hb_000463_140 0.1103066893 - - Poly(rC)-binding protein, putative [Ricinus communis]
18 Hb_004055_040 0.1114110255 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
19 Hb_000313_060 0.1115373326 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
20 Hb_000230_080 0.1141319222 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_002255_070 Hb_002255_070 Hb_126643_010 Hb_126643_010 Hb_002255_070--Hb_126643_010 Hb_000627_080 Hb_000627_080 Hb_002255_070--Hb_000627_080 Hb_000005_380 Hb_000005_380 Hb_002255_070--Hb_000005_380 Hb_000390_070 Hb_000390_070 Hb_002255_070--Hb_000390_070 Hb_001930_010 Hb_001930_010 Hb_002255_070--Hb_001930_010 Hb_000514_060 Hb_000514_060 Hb_002255_070--Hb_000514_060 Hb_003544_100 Hb_003544_100 Hb_126643_010--Hb_003544_100 Hb_126643_010--Hb_000627_080 Hb_003052_150 Hb_003052_150 Hb_126643_010--Hb_003052_150 Hb_116929_010 Hb_116929_010 Hb_126643_010--Hb_116929_010 Hb_003952_150 Hb_003952_150 Hb_126643_010--Hb_003952_150 Hb_000627_080--Hb_000390_070 Hb_004055_040 Hb_004055_040 Hb_000627_080--Hb_004055_040 Hb_000244_250 Hb_000244_250 Hb_000627_080--Hb_000244_250 Hb_000627_080--Hb_001930_010 Hb_000915_050 Hb_000915_050 Hb_000627_080--Hb_000915_050 Hb_007586_030 Hb_007586_030 Hb_000005_380--Hb_007586_030 Hb_000005_380--Hb_000244_250 Hb_123777_030 Hb_123777_030 Hb_000005_380--Hb_123777_030 Hb_011318_010 Hb_011318_010 Hb_000005_380--Hb_011318_010 Hb_005977_090 Hb_005977_090 Hb_000005_380--Hb_005977_090 Hb_000005_380--Hb_004055_040 Hb_007757_110 Hb_007757_110 Hb_000390_070--Hb_007757_110 Hb_000390_070--Hb_001930_010 Hb_000390_070--Hb_007586_030 Hb_000390_070--Hb_000244_250 Hb_000390_070--Hb_004055_040 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_003216_080 Hb_003216_080 Hb_001930_010--Hb_003216_080 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_124315_020 Hb_124315_020 Hb_001930_010--Hb_124315_020 Hb_001930_010--Hb_000514_060 Hb_009411_010 Hb_009411_010 Hb_000514_060--Hb_009411_010 Hb_000514_060--Hb_007757_110 Hb_001797_050 Hb_001797_050 Hb_000514_060--Hb_001797_050 Hb_000796_030 Hb_000796_030 Hb_000514_060--Hb_000796_030 Hb_002232_030 Hb_002232_030 Hb_000514_060--Hb_002232_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.664 10.0207 5.52949 4.75605 22.2559 19.6696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.76359 3.35433 19.3356 11.0694 7.21299

CAGE analysis