Hb_002256_020

Information

Type -
Description -
Location Contig2256: 45457-46101
Sequence    

Annotation

kegg
ID rcu:RCOM_1669060
description hypothetical protein
nr
ID XP_002514506.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9D0E3
description LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Mus musculus GN=Lysmd1 PE=2 SV=1
trembl
ID B9RL87
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1669060 PE=4 SV=1
Gene Ontology
ID GO:0003723
description lysm and peptidoglycan-binding domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23453: 45487-46024 , PASA_asmbl_23454: 46044-64499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002256_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000723_080 0.0740968356 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
3 Hb_000928_210 0.0875468274 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
4 Hb_000230_510 0.0922751156 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
5 Hb_008623_020 0.0938438225 - - PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]
6 Hb_004306_100 0.0955750171 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
7 Hb_000732_130 0.0984596409 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
8 Hb_005289_030 0.0988369315 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
9 Hb_002235_280 0.09901162 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
10 Hb_001699_130 0.1006309978 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
11 Hb_008695_100 0.1006645782 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
12 Hb_000671_050 0.104980159 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
13 Hb_001140_220 0.1055146667 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000120_680 0.1058097264 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
15 Hb_012019_010 0.1063284003 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
16 Hb_000876_070 0.1071766033 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
17 Hb_004724_080 0.108942981 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000567_120 0.1092545006 - - PREDICTED: transcription factor IIIB 50 kDa subunit-like [Jatropha curcas]
19 Hb_002739_100 0.1096222181 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
20 Hb_000258_270 0.1103810548 - - PREDICTED: cullin-3A [Jatropha curcas]

Gene co-expression network

sample Hb_002256_020 Hb_002256_020 Hb_000723_080 Hb_000723_080 Hb_002256_020--Hb_000723_080 Hb_000928_210 Hb_000928_210 Hb_002256_020--Hb_000928_210 Hb_000230_510 Hb_000230_510 Hb_002256_020--Hb_000230_510 Hb_008623_020 Hb_008623_020 Hb_002256_020--Hb_008623_020 Hb_004306_100 Hb_004306_100 Hb_002256_020--Hb_004306_100 Hb_000732_130 Hb_000732_130 Hb_002256_020--Hb_000732_130 Hb_008695_100 Hb_008695_100 Hb_000723_080--Hb_008695_100 Hb_000567_120 Hb_000567_120 Hb_000723_080--Hb_000567_120 Hb_016901_010 Hb_016901_010 Hb_000723_080--Hb_016901_010 Hb_001140_220 Hb_001140_220 Hb_000723_080--Hb_001140_220 Hb_005289_030 Hb_005289_030 Hb_000723_080--Hb_005289_030 Hb_000876_070 Hb_000876_070 Hb_000928_210--Hb_000876_070 Hb_004254_120 Hb_004254_120 Hb_000928_210--Hb_004254_120 Hb_002739_100 Hb_002739_100 Hb_000928_210--Hb_002739_100 Hb_004724_080 Hb_004724_080 Hb_000928_210--Hb_004724_080 Hb_000206_210 Hb_000206_210 Hb_000928_210--Hb_000206_210 Hb_002046_180 Hb_002046_180 Hb_000928_210--Hb_002046_180 Hb_000230_510--Hb_005289_030 Hb_006117_070 Hb_006117_070 Hb_000230_510--Hb_006117_070 Hb_001083_020 Hb_001083_020 Hb_000230_510--Hb_001083_020 Hb_000384_100 Hb_000384_100 Hb_000230_510--Hb_000384_100 Hb_012675_060 Hb_012675_060 Hb_000230_510--Hb_012675_060 Hb_012753_160 Hb_012753_160 Hb_000230_510--Hb_012753_160 Hb_075449_010 Hb_075449_010 Hb_008623_020--Hb_075449_010 Hb_000062_220 Hb_000062_220 Hb_008623_020--Hb_000062_220 Hb_012019_010 Hb_012019_010 Hb_008623_020--Hb_012019_010 Hb_008623_020--Hb_000928_210 Hb_000617_150 Hb_000617_150 Hb_008623_020--Hb_000617_150 Hb_004306_100--Hb_000732_130 Hb_004586_170 Hb_004586_170 Hb_004306_100--Hb_004586_170 Hb_004324_370 Hb_004324_370 Hb_004306_100--Hb_004324_370 Hb_004306_100--Hb_000723_080 Hb_001699_130 Hb_001699_130 Hb_004306_100--Hb_001699_130 Hb_011214_020 Hb_011214_020 Hb_000732_130--Hb_011214_020 Hb_000251_130 Hb_000251_130 Hb_000732_130--Hb_000251_130 Hb_000732_130--Hb_000384_100 Hb_008221_140 Hb_008221_140 Hb_000732_130--Hb_008221_140 Hb_002878_020 Hb_002878_020 Hb_000732_130--Hb_002878_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.99158 5.44735 1.51954 5.58109 6.17946 6.04634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.13512 13.2361 11.4967 3.44528 6.98696

CAGE analysis