Hb_002256_030

Information

Type -
Description -
Location Contig2256: 61237-64581
Sequence    

Annotation

kegg
ID rcu:RCOM_1669070
description hypothetical protein
nr
ID XP_002514507.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RL88
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1669070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23454: 46044-64499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002256_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_036790_100 0.0642841936 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
3 Hb_031527_040 0.0644828179 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
4 Hb_004032_360 0.064570003 - - PREDICTED: uncharacterized protein LOC103403885 [Malus domestica]
5 Hb_001552_020 0.0686645431 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
6 Hb_001242_060 0.0691716115 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
7 Hb_002739_100 0.0722733156 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
8 Hb_000416_040 0.0768335169 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
9 Hb_000563_320 0.0780774796 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
10 Hb_007416_180 0.078828106 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
11 Hb_001595_030 0.0790421383 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
12 Hb_003052_140 0.0797764942 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
13 Hb_017358_030 0.0799212902 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
14 Hb_004678_040 0.0805801746 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
15 Hb_000538_270 0.0812713436 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
16 Hb_000521_320 0.0813748052 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
17 Hb_000127_130 0.0829717141 - - PREDICTED: uncharacterized protein LOC105635483 [Jatropha curcas]
18 Hb_029866_090 0.0841821899 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
19 Hb_000876_070 0.0879550653 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
20 Hb_001157_040 0.0885760911 - - casein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002256_030 Hb_002256_030 Hb_036790_100 Hb_036790_100 Hb_002256_030--Hb_036790_100 Hb_031527_040 Hb_031527_040 Hb_002256_030--Hb_031527_040 Hb_004032_360 Hb_004032_360 Hb_002256_030--Hb_004032_360 Hb_001552_020 Hb_001552_020 Hb_002256_030--Hb_001552_020 Hb_001242_060 Hb_001242_060 Hb_002256_030--Hb_001242_060 Hb_002739_100 Hb_002739_100 Hb_002256_030--Hb_002739_100 Hb_001595_030 Hb_001595_030 Hb_036790_100--Hb_001595_030 Hb_000403_050 Hb_000403_050 Hb_036790_100--Hb_000403_050 Hb_036790_100--Hb_001242_060 Hb_001258_090 Hb_001258_090 Hb_036790_100--Hb_001258_090 Hb_000416_040 Hb_000416_040 Hb_036790_100--Hb_000416_040 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_000120_330 Hb_000120_330 Hb_004032_360--Hb_000120_330 Hb_027380_050 Hb_027380_050 Hb_004032_360--Hb_027380_050 Hb_001246_110 Hb_001246_110 Hb_004032_360--Hb_001246_110 Hb_000056_240 Hb_000056_240 Hb_004032_360--Hb_000056_240 Hb_001030_020 Hb_001030_020 Hb_004032_360--Hb_001030_020 Hb_028995_040 Hb_028995_040 Hb_001552_020--Hb_028995_040 Hb_029866_090 Hb_029866_090 Hb_001552_020--Hb_029866_090 Hb_001552_020--Hb_002739_100 Hb_000656_400 Hb_000656_400 Hb_001552_020--Hb_000656_400 Hb_002346_020 Hb_002346_020 Hb_001552_020--Hb_002346_020 Hb_000757_060 Hb_000757_060 Hb_001242_060--Hb_000757_060 Hb_001242_060--Hb_000016_250 Hb_000030_300 Hb_000030_300 Hb_001242_060--Hb_000030_300 Hb_001242_060--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_001242_060--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_002739_100--Hb_000876_070 Hb_002739_100--Hb_005779_060 Hb_007691_030 Hb_007691_030 Hb_002739_100--Hb_007691_030 Hb_002739_100--Hb_001242_060 Hb_000928_210 Hb_000928_210 Hb_002739_100--Hb_000928_210 Hb_002739_100--Hb_031527_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3437 15.4555 9.61532 9.64308 14.7442 12.9258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5051 22.2375 17.2978 7.22731 8.84075

CAGE analysis