Hb_002259_040

Information

Type -
Description -
Location Contig2259: 20798-23912
Sequence    

Annotation

kegg
ID rcu:RCOM_0613730
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002528537.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9FG33
description Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1
trembl
ID B9SRB8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0613730 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable l-type lectin-domain containing receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_040 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000189_230 0.2176145732 - - Auxin-induced protein [Aegilops tauschii]
3 Hb_002735_040 0.2397814704 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
4 Hb_105085_010 0.2405414721 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
5 Hb_116125_010 0.245942886 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
6 Hb_000608_060 0.2578229744 - - -
7 Hb_000270_210 0.2697364666 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
8 Hb_000733_040 0.2738952259 - - hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
9 Hb_129067_010 0.286543037 - - Cytochrome P450 superfamily protein [Theobroma cacao]
10 Hb_004429_030 0.2915414357 - - hypothetical protein POPTR_0010s16560g [Populus trichocarpa]
11 Hb_005389_110 0.2926552597 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
12 Hb_018344_010 0.2927500956 - - PREDICTED: endochitinase 2-like [Populus euphratica]
13 Hb_000252_250 0.2971504364 - - unknown [Lotus japonicus]
14 Hb_134894_010 0.2986334545 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
15 Hb_089140_060 0.308118465 - - Uncharacterized protein TCM_037529 [Theobroma cacao]
16 Hb_088542_010 0.3086409928 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
17 Hb_001632_010 0.3101955244 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
18 Hb_002299_050 0.3109021504 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
19 Hb_005122_060 0.3109177356 - - unnamed protein product [Vitis vinifera]
20 Hb_001989_020 0.313451255 - - hypothetical protein JCGZ_15521 [Jatropha curcas]

Gene co-expression network

sample Hb_002259_040 Hb_002259_040 Hb_000189_230 Hb_000189_230 Hb_002259_040--Hb_000189_230 Hb_002735_040 Hb_002735_040 Hb_002259_040--Hb_002735_040 Hb_105085_010 Hb_105085_010 Hb_002259_040--Hb_105085_010 Hb_116125_010 Hb_116125_010 Hb_002259_040--Hb_116125_010 Hb_000608_060 Hb_000608_060 Hb_002259_040--Hb_000608_060 Hb_000270_210 Hb_000270_210 Hb_002259_040--Hb_000270_210 Hb_010521_010 Hb_010521_010 Hb_000189_230--Hb_010521_010 Hb_000189_230--Hb_000608_060 Hb_002299_050 Hb_002299_050 Hb_000189_230--Hb_002299_050 Hb_000009_620 Hb_000009_620 Hb_000189_230--Hb_000009_620 Hb_030291_020 Hb_030291_020 Hb_000189_230--Hb_030291_020 Hb_002735_040--Hb_105085_010 Hb_002804_050 Hb_002804_050 Hb_002735_040--Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_002735_040--Hb_006615_100 Hb_002843_050 Hb_002843_050 Hb_002735_040--Hb_002843_050 Hb_005122_060 Hb_005122_060 Hb_002735_040--Hb_005122_060 Hb_012384_050 Hb_012384_050 Hb_002735_040--Hb_012384_050 Hb_105085_010--Hb_002804_050 Hb_105085_010--Hb_005122_060 Hb_105085_010--Hb_002843_050 Hb_105085_010--Hb_006615_100 Hb_011344_170 Hb_011344_170 Hb_105085_010--Hb_011344_170 Hb_018344_010 Hb_018344_010 Hb_116125_010--Hb_018344_010 Hb_116125_010--Hb_000270_210 Hb_116125_010--Hb_105085_010 Hb_002232_150 Hb_002232_150 Hb_116125_010--Hb_002232_150 Hb_005389_110 Hb_005389_110 Hb_116125_010--Hb_005389_110 Hb_000608_060--Hb_000009_620 Hb_000252_250 Hb_000252_250 Hb_000608_060--Hb_000252_250 Hb_011218_080 Hb_011218_080 Hb_000608_060--Hb_011218_080 Hb_002025_310 Hb_002025_310 Hb_000608_060--Hb_002025_310 Hb_000608_060--Hb_002299_050 Hb_000270_210--Hb_005389_110 Hb_000640_150 Hb_000640_150 Hb_000270_210--Hb_000640_150 Hb_000270_210--Hb_018344_010 Hb_000270_210--Hb_002232_150 Hb_000270_210--Hb_002735_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.370164 0.105814 0.0582726 0 0.116358 0.277238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0973351 0.319532 0

CAGE analysis