Hb_002259_070

Information

Type -
Description -
Location Contig2259: 37621-42964
Sequence    

Annotation

kegg
ID rcu:RCOM_0613760
description taz protein, putative
nr
ID XP_002528540.1
description taz protein, putative [Ricinus communis]
swissprot
ID Q9ZV87
description N-acylphosphatidylethanolamine synthase OS=Arabidopsis thaliana GN=At1g78690 PE=2 SV=1
trembl
ID B9SRC1
description Taz protein, putative OS=Ricinus communis GN=RCOM_0613760 PE=4 SV=1
Gene Ontology
ID GO:0016746
description n-acylphosphatidylethanolamine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23458: 39901-40114 , PASA_asmbl_23459: 40413-41055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_070 0.0 - - taz protein, putative [Ricinus communis]
2 Hb_019253_030 0.0594910515 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
3 Hb_005511_160 0.0686902034 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
4 Hb_012753_230 0.0722922246 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
5 Hb_000574_160 0.077745402 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
6 Hb_001780_040 0.0783367282 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
7 Hb_010261_060 0.0788112199 - - unnamed protein product [Coffea canephora]
8 Hb_000933_160 0.0813764197 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
9 Hb_007944_040 0.0867937206 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
10 Hb_003734_140 0.088093904 - - conserved hypothetical protein [Ricinus communis]
11 Hb_143766_050 0.0881290643 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
12 Hb_000029_200 0.0884276714 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
13 Hb_001300_040 0.0884598531 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
14 Hb_003683_110 0.0886136283 - - JHL10I11.3 [Jatropha curcas]
15 Hb_000510_110 0.0892169731 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
16 Hb_012573_070 0.0899008477 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003528_060 0.0910664027 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
18 Hb_009686_030 0.0915117599 - - -
19 Hb_001158_230 0.0915245675 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
20 Hb_000127_180 0.0919145893 - - 40S ribosomal protein S18, putative [Ricinus communis]

Gene co-expression network

sample Hb_002259_070 Hb_002259_070 Hb_019253_030 Hb_019253_030 Hb_002259_070--Hb_019253_030 Hb_005511_160 Hb_005511_160 Hb_002259_070--Hb_005511_160 Hb_012753_230 Hb_012753_230 Hb_002259_070--Hb_012753_230 Hb_000574_160 Hb_000574_160 Hb_002259_070--Hb_000574_160 Hb_001780_040 Hb_001780_040 Hb_002259_070--Hb_001780_040 Hb_010261_060 Hb_010261_060 Hb_002259_070--Hb_010261_060 Hb_143766_050 Hb_143766_050 Hb_019253_030--Hb_143766_050 Hb_019253_030--Hb_010261_060 Hb_019253_030--Hb_000574_160 Hb_009686_030 Hb_009686_030 Hb_019253_030--Hb_009686_030 Hb_001540_010 Hb_001540_010 Hb_019253_030--Hb_001540_010 Hb_011628_040 Hb_011628_040 Hb_005511_160--Hb_011628_040 Hb_001979_040 Hb_001979_040 Hb_005511_160--Hb_001979_040 Hb_003656_070 Hb_003656_070 Hb_005511_160--Hb_003656_070 Hb_003203_040 Hb_003203_040 Hb_005511_160--Hb_003203_040 Hb_007416_030 Hb_007416_030 Hb_005511_160--Hb_007416_030 Hb_004052_020 Hb_004052_020 Hb_012753_230--Hb_004052_020 Hb_000948_210 Hb_000948_210 Hb_012753_230--Hb_000948_210 Hb_019516_100 Hb_019516_100 Hb_012753_230--Hb_019516_100 Hb_001538_120 Hb_001538_120 Hb_012753_230--Hb_001538_120 Hb_007944_040 Hb_007944_040 Hb_012753_230--Hb_007944_040 Hb_000906_040 Hb_000906_040 Hb_000574_160--Hb_000906_040 Hb_002235_350 Hb_002235_350 Hb_000574_160--Hb_002235_350 Hb_000029_200 Hb_000029_200 Hb_000574_160--Hb_000029_200 Hb_000574_160--Hb_001780_040 Hb_002768_030 Hb_002768_030 Hb_001780_040--Hb_002768_030 Hb_003683_110 Hb_003683_110 Hb_001780_040--Hb_003683_110 Hb_001780_040--Hb_002235_350 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_000127_180 Hb_000127_180 Hb_001780_040--Hb_000127_180 Hb_003226_100 Hb_003226_100 Hb_001780_040--Hb_003226_100 Hb_003528_060 Hb_003528_060 Hb_010261_060--Hb_003528_060 Hb_010261_060--Hb_001538_120 Hb_000025_530 Hb_000025_530 Hb_010261_060--Hb_000025_530 Hb_001818_020 Hb_001818_020 Hb_010261_060--Hb_001818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.74642 2.55521 5.53445 3.43798 8.29543 8.04663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8151 30.8757 9.14453 4.96966 4.76303

CAGE analysis