Hb_002259_090

Information

Type -
Description -
Location Contig2259: 52826-57139
Sequence    

Annotation

kegg
ID rcu:RCOM_0612740
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012067245.1
description PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
swissprot
ID Q8RXN0
description ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1
trembl
ID B9SI51
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0612740 PE=3 SV=1
Gene Ontology
ID GO:0009897
description abc transporter g family member 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23463: 52846-57120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_090 0.0 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
2 Hb_008847_050 0.0395584907 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001007_070 0.0535916729 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
4 Hb_003025_160 0.0563942675 - - Protein HVA22, putative [Ricinus communis]
5 Hb_001999_230 0.0634248267 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
6 Hb_005054_120 0.0683811065 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
7 Hb_001277_130 0.0685869503 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
8 Hb_008225_050 0.0687027896 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
9 Hb_000254_130 0.0688448361 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
10 Hb_009193_070 0.0699680778 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
11 Hb_002852_010 0.0712525454 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_001141_100 0.0723086928 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
13 Hb_033363_040 0.0776968183 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
14 Hb_004970_060 0.0790763698 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
15 Hb_018591_020 0.0807209977 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
16 Hb_001047_210 0.0812585793 - - PSI reaction center subunit II [Citrus sinensis]
17 Hb_004338_050 0.0813474365 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
18 Hb_028491_010 0.0821942072 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
19 Hb_005694_120 0.0843931335 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
20 Hb_001975_100 0.0845324886 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002259_090 Hb_002259_090 Hb_008847_050 Hb_008847_050 Hb_002259_090--Hb_008847_050 Hb_001007_070 Hb_001007_070 Hb_002259_090--Hb_001007_070 Hb_003025_160 Hb_003025_160 Hb_002259_090--Hb_003025_160 Hb_001999_230 Hb_001999_230 Hb_002259_090--Hb_001999_230 Hb_005054_120 Hb_005054_120 Hb_002259_090--Hb_005054_120 Hb_001277_130 Hb_001277_130 Hb_002259_090--Hb_001277_130 Hb_009193_070 Hb_009193_070 Hb_008847_050--Hb_009193_070 Hb_001141_100 Hb_001141_100 Hb_008847_050--Hb_001141_100 Hb_008847_050--Hb_001277_130 Hb_028491_010 Hb_028491_010 Hb_008847_050--Hb_028491_010 Hb_008847_050--Hb_003025_160 Hb_001007_070--Hb_001999_230 Hb_000099_120 Hb_000099_120 Hb_001007_070--Hb_000099_120 Hb_001007_070--Hb_005054_120 Hb_001007_070--Hb_009193_070 Hb_000254_130 Hb_000254_130 Hb_001007_070--Hb_000254_130 Hb_008225_050 Hb_008225_050 Hb_003025_160--Hb_008225_050 Hb_003025_160--Hb_000254_130 Hb_004970_060 Hb_004970_060 Hb_003025_160--Hb_004970_060 Hb_007537_040 Hb_007537_040 Hb_003025_160--Hb_007537_040 Hb_003025_160--Hb_001999_230 Hb_001999_230--Hb_000254_130 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001564_120 Hb_001564_120 Hb_001999_230--Hb_001564_120 Hb_001975_100 Hb_001975_100 Hb_001999_230--Hb_001975_100 Hb_002852_010 Hb_002852_010 Hb_005054_120--Hb_002852_010 Hb_005063_030 Hb_005063_030 Hb_005054_120--Hb_005063_030 Hb_005054_120--Hb_001564_120 Hb_005054_120--Hb_001999_230 Hb_001277_130--Hb_028491_010 Hb_001277_130--Hb_001141_100 Hb_147028_010 Hb_147028_010 Hb_001277_130--Hb_147028_010 Hb_004607_110 Hb_004607_110 Hb_001277_130--Hb_004607_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00907262 8.85612 49.7537 39.4512 0 0.116152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0665145 0.0261701 0.0499463 0.950515 87.8885

CAGE analysis