Hb_002259_110

Information

Type -
Description -
Location Contig2259: 82801-88705
Sequence    

Annotation

kegg
ID rcu:RCOM_0612710
description hypothetical protein
nr
ID XP_012067294.1
description PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
swissprot
ID Q6ZPJ0
description Testis-expressed sequence 2 protein OS=Mus musculus GN=Tex2 PE=1 SV=2
trembl
ID A0A067LGJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08445 PE=4 SV=1
Gene Ontology
ID GO:0016021
description testis-expressed sequence 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23467: 86028-86987 , PASA_asmbl_23468: 82845-88949 , PASA_asmbl_23469: 84749-85071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_110 0.0 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
2 Hb_002553_010 0.0897775696 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
3 Hb_152910_010 0.0923752514 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
4 Hb_001133_090 0.0979610358 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
5 Hb_075203_010 0.0986979155 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
6 Hb_000134_250 0.1047229313 - - protein with unknown function [Ricinus communis]
7 Hb_001373_160 0.1082625027 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
8 Hb_001205_180 0.110248712 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
9 Hb_000994_020 0.1105546302 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
10 Hb_004800_130 0.1116853731 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
11 Hb_009178_010 0.1121006634 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
12 Hb_001488_210 0.1133221152 - - PREDICTED: protein RIK [Jatropha curcas]
13 Hb_010287_030 0.1151848713 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002609_190 0.1171359929 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
15 Hb_002025_270 0.1180399443 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
16 Hb_009659_030 0.1192160593 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
17 Hb_004718_060 0.1192192675 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
18 Hb_000165_120 0.119387573 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
19 Hb_005833_030 0.1194339027 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
20 Hb_015183_100 0.1202419292 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]

Gene co-expression network

sample Hb_002259_110 Hb_002259_110 Hb_002553_010 Hb_002553_010 Hb_002259_110--Hb_002553_010 Hb_152910_010 Hb_152910_010 Hb_002259_110--Hb_152910_010 Hb_001133_090 Hb_001133_090 Hb_002259_110--Hb_001133_090 Hb_075203_010 Hb_075203_010 Hb_002259_110--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_002259_110--Hb_000134_250 Hb_001373_160 Hb_001373_160 Hb_002259_110--Hb_001373_160 Hb_004800_130 Hb_004800_130 Hb_002553_010--Hb_004800_130 Hb_002553_010--Hb_152910_010 Hb_001205_180 Hb_001205_180 Hb_002553_010--Hb_001205_180 Hb_001488_210 Hb_001488_210 Hb_002553_010--Hb_001488_210 Hb_000856_300 Hb_000856_300 Hb_002553_010--Hb_000856_300 Hb_172257_010 Hb_172257_010 Hb_152910_010--Hb_172257_010 Hb_030545_030 Hb_030545_030 Hb_152910_010--Hb_030545_030 Hb_004319_050 Hb_004319_050 Hb_152910_010--Hb_004319_050 Hb_000302_170 Hb_000302_170 Hb_152910_010--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_152910_010--Hb_000300_550 Hb_000640_190 Hb_000640_190 Hb_152910_010--Hb_000640_190 Hb_000421_110 Hb_000421_110 Hb_001133_090--Hb_000421_110 Hb_000418_050 Hb_000418_050 Hb_001133_090--Hb_000418_050 Hb_007031_040 Hb_007031_040 Hb_001133_090--Hb_007031_040 Hb_005885_030 Hb_005885_030 Hb_001133_090--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_001133_090--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_001133_090--Hb_010775_010 Hb_009659_030 Hb_009659_030 Hb_075203_010--Hb_009659_030 Hb_075203_010--Hb_000134_250 Hb_000062_360 Hb_000062_360 Hb_075203_010--Hb_000062_360 Hb_011344_070 Hb_011344_070 Hb_075203_010--Hb_011344_070 Hb_054865_020 Hb_054865_020 Hb_075203_010--Hb_054865_020 Hb_000994_020 Hb_000994_020 Hb_000134_250--Hb_000994_020 Hb_000134_250--Hb_001373_160 Hb_000260_770 Hb_000260_770 Hb_000134_250--Hb_000260_770 Hb_000134_250--Hb_009659_030 Hb_006501_010 Hb_006501_010 Hb_000134_250--Hb_006501_010 Hb_010287_030 Hb_010287_030 Hb_000134_250--Hb_010287_030 Hb_033554_020 Hb_033554_020 Hb_001373_160--Hb_033554_020 Hb_012940_040 Hb_012940_040 Hb_001373_160--Hb_012940_040 Hb_004724_370 Hb_004724_370 Hb_001373_160--Hb_004724_370 Hb_001171_030 Hb_001171_030 Hb_001373_160--Hb_001171_030 Hb_001373_160--Hb_010287_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73704 23.4143 27.405 14.0367 10.7591 10.298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56694 1.47901 2.10498 15.351 11.0463

CAGE analysis