Hb_002259_140

Information

Type -
Description -
Location Contig2259: 95606-98235
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23472: 95832-98989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_140 0.0 - - -
2 Hb_021906_010 0.1345657918 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
3 Hb_004200_030 0.1374869154 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
4 Hb_007386_010 0.150835538 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
5 Hb_004097_040 0.1683427288 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_001911_070 0.2170868969 - - -
7 Hb_004241_010 0.2181438997 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
8 Hb_002099_010 0.2398014585 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
9 Hb_003120_100 0.2399083232 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
10 Hb_006376_010 0.2506525091 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
11 Hb_000136_160 0.2515308012 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_044555_010 0.2589482447 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
13 Hb_000205_200 0.2697297311 - - -
14 Hb_186158_010 0.2697521512 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000363_270 0.2716529002 - - hypothetical protein PRUPE_ppa024846mg [Prunus persica]
16 Hb_002081_170 0.2737961908 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
17 Hb_000975_270 0.2771022203 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
18 Hb_005714_050 0.2790634801 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
19 Hb_117092_010 0.2818755381 - - acyl-CoA oxidase, putative [Ricinus communis]
20 Hb_032974_010 0.2837067429 - - -

Gene co-expression network

sample Hb_002259_140 Hb_002259_140 Hb_021906_010 Hb_021906_010 Hb_002259_140--Hb_021906_010 Hb_004200_030 Hb_004200_030 Hb_002259_140--Hb_004200_030 Hb_007386_010 Hb_007386_010 Hb_002259_140--Hb_007386_010 Hb_004097_040 Hb_004097_040 Hb_002259_140--Hb_004097_040 Hb_001911_070 Hb_001911_070 Hb_002259_140--Hb_001911_070 Hb_004241_010 Hb_004241_010 Hb_002259_140--Hb_004241_010 Hb_021906_010--Hb_007386_010 Hb_002099_010 Hb_002099_010 Hb_021906_010--Hb_002099_010 Hb_021906_010--Hb_004200_030 Hb_021906_010--Hb_004097_040 Hb_000175_580 Hb_000175_580 Hb_021906_010--Hb_000175_580 Hb_004200_030--Hb_007386_010 Hb_004200_030--Hb_004097_040 Hb_044555_010 Hb_044555_010 Hb_004200_030--Hb_044555_010 Hb_002081_170 Hb_002081_170 Hb_004200_030--Hb_002081_170 Hb_007386_010--Hb_002099_010 Hb_007386_010--Hb_004097_040 Hb_007386_010--Hb_044555_010 Hb_006376_010 Hb_006376_010 Hb_004097_040--Hb_006376_010 Hb_000136_160 Hb_000136_160 Hb_004097_040--Hb_000136_160 Hb_004097_040--Hb_044555_010 Hb_001817_140 Hb_001817_140 Hb_001911_070--Hb_001817_140 Hb_001623_070 Hb_001623_070 Hb_001911_070--Hb_001623_070 Hb_003120_100 Hb_003120_100 Hb_001911_070--Hb_003120_100 Hb_001911_070--Hb_021906_010 Hb_000025_440 Hb_000025_440 Hb_001911_070--Hb_000025_440 Hb_012379_010 Hb_012379_010 Hb_004241_010--Hb_012379_010 Hb_002157_090 Hb_002157_090 Hb_004241_010--Hb_002157_090 Hb_000111_230 Hb_000111_230 Hb_004241_010--Hb_000111_230 Hb_001584_030 Hb_001584_030 Hb_004241_010--Hb_001584_030 Hb_000414_150 Hb_000414_150 Hb_004241_010--Hb_000414_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0635474 0.144266 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191899 0.301457 0 0 0

CAGE analysis