Hb_002259_160

Information

Type -
Description -
Location Contig2259: 102654-104650
Sequence    

Annotation

kegg
ID edi:EDI_206240
description hypothetical protein
nr
ID EST08748.1
description hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
swissprot
ID -
description -
trembl
ID V5EYE2
description Uncharacterized protein OS=Pseudozyma brasiliensis (strain GHG001) GN=PSEUBRA_SCAF14g01508 PE=4 SV=1
Gene Ontology
ID GO:0005689
description phd finger-like domain-containing protein 5b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23474: 102773-104499 , PASA_asmbl_23475: 102826-102969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_160 0.0 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
2 Hb_000083_170 0.0804741655 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
3 Hb_037887_010 0.0926745942 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
4 Hb_003352_040 0.0935154891 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
5 Hb_012675_070 0.0954481982 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
6 Hb_000326_090 0.1016941206 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
7 Hb_041205_010 0.1020080901 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001504_080 0.1074669939 - - golgi snare 11 protein, putative [Ricinus communis]
9 Hb_082006_010 0.1125853899 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012653_040 0.1145928933 - - UV-induced protein uvi31, putative [Ricinus communis]
11 Hb_006198_080 0.1195695173 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
12 Hb_021238_050 0.1198934226 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001268_050 0.1216352464 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
14 Hb_005588_070 0.1238583811 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
15 Hb_005867_020 0.1246065544 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
16 Hb_000125_010 0.1259079531 transcription factor TF Family: mTERF -
17 Hb_003092_030 0.1260532224 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
18 Hb_001205_150 0.1290194026 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
19 Hb_067776_010 0.1296924795 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
20 Hb_031089_040 0.1303316676 - - thioredoxin H-type 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002259_160 Hb_002259_160 Hb_000083_170 Hb_000083_170 Hb_002259_160--Hb_000083_170 Hb_037887_010 Hb_037887_010 Hb_002259_160--Hb_037887_010 Hb_003352_040 Hb_003352_040 Hb_002259_160--Hb_003352_040 Hb_012675_070 Hb_012675_070 Hb_002259_160--Hb_012675_070 Hb_000326_090 Hb_000326_090 Hb_002259_160--Hb_000326_090 Hb_041205_010 Hb_041205_010 Hb_002259_160--Hb_041205_010 Hb_000083_170--Hb_037887_010 Hb_005867_020 Hb_005867_020 Hb_000083_170--Hb_005867_020 Hb_000162_260 Hb_000162_260 Hb_000083_170--Hb_000162_260 Hb_000083_170--Hb_000326_090 Hb_012653_040 Hb_012653_040 Hb_000083_170--Hb_012653_040 Hb_003092_030 Hb_003092_030 Hb_037887_010--Hb_003092_030 Hb_000898_050 Hb_000898_050 Hb_037887_010--Hb_000898_050 Hb_006198_080 Hb_006198_080 Hb_037887_010--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_003352_040--Hb_000083_170 Hb_003352_040--Hb_037887_010 Hb_003352_040--Hb_012675_070 Hb_001268_050 Hb_001268_050 Hb_003352_040--Hb_001268_050 Hb_001504_080 Hb_001504_080 Hb_003352_040--Hb_001504_080 Hb_005588_070 Hb_005588_070 Hb_012675_070--Hb_005588_070 Hb_012675_070--Hb_000083_170 Hb_012675_070--Hb_037887_010 Hb_005400_030 Hb_005400_030 Hb_012675_070--Hb_005400_030 Hb_002296_040 Hb_002296_040 Hb_000326_090--Hb_002296_040 Hb_066768_010 Hb_066768_010 Hb_000326_090--Hb_066768_010 Hb_000326_090--Hb_005867_020 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_000215_200 Hb_000215_200 Hb_041205_010--Hb_000215_200 Hb_082006_010 Hb_082006_010 Hb_041205_010--Hb_082006_010 Hb_002078_260 Hb_002078_260 Hb_041205_010--Hb_002078_260 Hb_000641_020 Hb_000641_020 Hb_041205_010--Hb_000641_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4422 30.0882 18.2101 133.102 35.7836 176.885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.1026 137.308 108.409 45.5799 46.6781

CAGE analysis