Hb_002259_170

Information

Type -
Description -
Location Contig2259: 107351-113118
Sequence    

Annotation

kegg
ID cit:102627209
description internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial-like
nr
ID XP_012067372.1
description PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8GWA1
description Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Arabidopsis thaliana GN=NDA1 PE=2 SV=1
trembl
ID A0A067LPM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08451 PE=4 SV=1
Gene Ontology
ID GO:0003954
description internal alternative nad h-ubiquinone oxidoreductase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23477: 107388-113090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_170 0.0 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
2 Hb_009288_010 0.0722851635 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_000452_030 0.0741250668 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
4 Hb_001269_370 0.0744619272 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
5 Hb_001511_090 0.0790026732 - - PREDICTED: uncharacterized protein LOC105645861 [Jatropha curcas]
6 Hb_000506_110 0.0894465502 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Jatropha curcas]
7 Hb_000137_010 0.0911990433 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
8 Hb_000088_260 0.0917369226 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
9 Hb_000340_040 0.0972725897 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
10 Hb_006970_050 0.1005847835 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
11 Hb_000015_090 0.1009472702 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
12 Hb_001269_620 0.1013227332 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
13 Hb_000711_010 0.101679647 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
14 Hb_004774_090 0.1026288823 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
15 Hb_000680_120 0.102850786 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
16 Hb_002686_230 0.105521685 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000673_010 0.1062771044 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
18 Hb_000169_020 0.1067791791 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
19 Hb_001766_070 0.1075295282 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001160_100 0.1078855313 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002259_170 Hb_002259_170 Hb_009288_010 Hb_009288_010 Hb_002259_170--Hb_009288_010 Hb_000452_030 Hb_000452_030 Hb_002259_170--Hb_000452_030 Hb_001269_370 Hb_001269_370 Hb_002259_170--Hb_001269_370 Hb_001511_090 Hb_001511_090 Hb_002259_170--Hb_001511_090 Hb_000506_110 Hb_000506_110 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010 Hb_002686_230 Hb_002686_230 Hb_009288_010--Hb_002686_230 Hb_006970_050 Hb_006970_050 Hb_009288_010--Hb_006970_050 Hb_002272_030 Hb_002272_030 Hb_009288_010--Hb_002272_030 Hb_006100_020 Hb_006100_020 Hb_009288_010--Hb_006100_020 Hb_002042_050 Hb_002042_050 Hb_009288_010--Hb_002042_050 Hb_000015_090 Hb_000015_090 Hb_000452_030--Hb_000015_090 Hb_003687_130 Hb_003687_130 Hb_000452_030--Hb_003687_130 Hb_000979_140 Hb_000979_140 Hb_000452_030--Hb_000979_140 Hb_000015_200 Hb_000015_200 Hb_000452_030--Hb_000015_200 Hb_111552_010 Hb_111552_010 Hb_000452_030--Hb_111552_010 Hb_001269_370--Hb_000506_110 Hb_001269_370--Hb_001511_090 Hb_001269_370--Hb_000452_030 Hb_000920_130 Hb_000920_130 Hb_001269_370--Hb_000920_130 Hb_001307_100 Hb_001307_100 Hb_001269_370--Hb_001307_100 Hb_000340_040 Hb_000340_040 Hb_001511_090--Hb_000340_040 Hb_000088_260 Hb_000088_260 Hb_001511_090--Hb_000088_260 Hb_001008_130 Hb_001008_130 Hb_001511_090--Hb_001008_130 Hb_000023_360 Hb_000023_360 Hb_001511_090--Hb_000023_360 Hb_000169_020 Hb_000169_020 Hb_001511_090--Hb_000169_020 Hb_003462_180 Hb_003462_180 Hb_000506_110--Hb_003462_180 Hb_000506_110--Hb_001511_090 Hb_000160_140 Hb_000160_140 Hb_000506_110--Hb_000160_140 Hb_008120_040 Hb_008120_040 Hb_000506_110--Hb_008120_040 Hb_000680_120 Hb_000680_120 Hb_000137_010--Hb_000680_120 Hb_000956_040 Hb_000956_040 Hb_000137_010--Hb_000956_040 Hb_000230_460 Hb_000230_460 Hb_000137_010--Hb_000230_460 Hb_000788_030 Hb_000788_030 Hb_000137_010--Hb_000788_030 Hb_005305_100 Hb_005305_100 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0374 61.6379 56.0794 41.7986 9.98793 12.4999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8562 27.4505 29.1067 28.5622 64.9525

CAGE analysis