Hb_002259_220

Information

Type transcription factor
Description TF Family: C3H
Location Contig2259: 189558-191675
Sequence    

Annotation

kegg
ID rcu:RCOM_0612590
description transcription factor, putative
nr
ID XP_012067418.1
description PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
swissprot
ID Q9LUZ4
description Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1
trembl
ID A0A067LPM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08456 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 66 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23480: 189049-192492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_220 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
2 Hb_004052_110 0.0665305523 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
3 Hb_001514_240 0.0750378349 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
4 Hb_011188_010 0.0833290091 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
5 Hb_009078_020 0.0903518623 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
6 Hb_001059_060 0.0915221213 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
7 Hb_000477_070 0.0931516505 - - histone h2a, putative [Ricinus communis]
8 Hb_000979_140 0.0962420031 - - kinase family protein [Populus trichocarpa]
9 Hb_001865_100 0.0964224692 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
10 Hb_009449_100 0.0968825921 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
11 Hb_000098_180 0.0994892031 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
12 Hb_013968_010 0.1011791709 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
13 Hb_001999_320 0.1075310321 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
14 Hb_001998_210 0.1084786377 - - unnamed protein product [Coffea canephora]
15 Hb_003687_130 0.1117178142 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
16 Hb_054865_050 0.1119845903 - - calcium-dependent protein kinase, putative [Ricinus communis]
17 Hb_002849_050 0.112115763 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
18 Hb_004577_010 0.1147588565 - - PREDICTED: transmembrane protein 45A [Prunus mume]
19 Hb_003581_130 0.1168558319 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_000197_180 0.1174869907 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002259_220 Hb_002259_220 Hb_004052_110 Hb_004052_110 Hb_002259_220--Hb_004052_110 Hb_001514_240 Hb_001514_240 Hb_002259_220--Hb_001514_240 Hb_011188_010 Hb_011188_010 Hb_002259_220--Hb_011188_010 Hb_009078_020 Hb_009078_020 Hb_002259_220--Hb_009078_020 Hb_001059_060 Hb_001059_060 Hb_002259_220--Hb_001059_060 Hb_000477_070 Hb_000477_070 Hb_002259_220--Hb_000477_070 Hb_004052_110--Hb_001059_060 Hb_001998_210 Hb_001998_210 Hb_004052_110--Hb_001998_210 Hb_001865_100 Hb_001865_100 Hb_004052_110--Hb_001865_100 Hb_000979_140 Hb_000979_140 Hb_004052_110--Hb_000979_140 Hb_004052_110--Hb_011188_010 Hb_026698_020 Hb_026698_020 Hb_001514_240--Hb_026698_020 Hb_009449_100 Hb_009449_100 Hb_001514_240--Hb_009449_100 Hb_001499_070 Hb_001499_070 Hb_001514_240--Hb_001499_070 Hb_013968_010 Hb_013968_010 Hb_001514_240--Hb_013968_010 Hb_187005_010 Hb_187005_010 Hb_001514_240--Hb_187005_010 Hb_011188_010--Hb_009078_020 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_009078_020--Hb_001059_060 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_027043_010 Hb_027043_010 Hb_000477_070--Hb_027043_010 Hb_002686_410 Hb_002686_410 Hb_000477_070--Hb_002686_410 Hb_007290_070 Hb_007290_070 Hb_000477_070--Hb_007290_070 Hb_000477_070--Hb_002809_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0942 49.4923 62.9116 45.9056 6.94988 9.52232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.28216 5.16676 10.0657 27.2384 51.369

CAGE analysis