Hb_002260_010

Information

Type -
Description -
Location Contig2260: 7260-9930
Sequence    

Annotation

kegg
ID vvi:100253947
description uncharacterized protein C6C3.02c
nr
ID XP_011087965.1
description PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
swissprot
ID Q10307
description Uncharacterized protein C6C3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6C3.02c PE=4 SV=1
trembl
ID S8C3U7
description Uncharacterized protein OS=Genlisea aurea GN=M569_15712 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23495: 7388-9917
cDNA
(Sanger)
(ID:Location)		 015_A20.ab1: 7388-9856

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_010 0.0 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
2 Hb_024074_010 0.0830390155 - - PREDICTED: cytochrome c [Jatropha curcas]
3 Hb_006256_030 0.0938577889 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
4 Hb_001252_220 0.0994869244 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
5 Hb_003020_150 0.1002204796 - - tropinone reductase, putative [Ricinus communis]
6 Hb_000731_190 0.1061686619 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
7 Hb_001493_050 0.1123722431 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
8 Hb_006355_040 0.1180029004 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
9 Hb_001188_030 0.1199108011 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
10 Hb_006478_160 0.1200452955 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
11 Hb_001718_030 0.1202343163 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
12 Hb_003669_020 0.1212577839 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
13 Hb_000424_200 0.1214866315 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
14 Hb_002060_010 0.1221850877 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
15 Hb_183612_060 0.1225153382 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
16 Hb_007037_020 0.1234689763 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
17 Hb_004057_010 0.1255663157 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
18 Hb_022318_020 0.1267608485 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
19 Hb_000302_140 0.1286327961 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
20 Hb_003929_150 0.1287408098 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002260_010 Hb_002260_010 Hb_024074_010 Hb_024074_010 Hb_002260_010--Hb_024074_010 Hb_006256_030 Hb_006256_030 Hb_002260_010--Hb_006256_030 Hb_001252_220 Hb_001252_220 Hb_002260_010--Hb_001252_220 Hb_003020_150 Hb_003020_150 Hb_002260_010--Hb_003020_150 Hb_000731_190 Hb_000731_190 Hb_002260_010--Hb_000731_190 Hb_001493_050 Hb_001493_050 Hb_002260_010--Hb_001493_050 Hb_000302_140 Hb_000302_140 Hb_024074_010--Hb_000302_140 Hb_024074_010--Hb_000731_190 Hb_001053_140 Hb_001053_140 Hb_024074_010--Hb_001053_140 Hb_004057_010 Hb_004057_010 Hb_024074_010--Hb_004057_010 Hb_131181_010 Hb_131181_010 Hb_024074_010--Hb_131181_010 Hb_163256_020 Hb_163256_020 Hb_006256_030--Hb_163256_020 Hb_002060_010 Hb_002060_010 Hb_006256_030--Hb_002060_010 Hb_022318_020 Hb_022318_020 Hb_006256_030--Hb_022318_020 Hb_158445_010 Hb_158445_010 Hb_006256_030--Hb_158445_010 Hb_001718_030 Hb_001718_030 Hb_006256_030--Hb_001718_030 Hb_012022_140 Hb_012022_140 Hb_001252_220--Hb_012022_140 Hb_001252_220--Hb_004057_010 Hb_001252_220--Hb_024074_010 Hb_000005_300 Hb_000005_300 Hb_001252_220--Hb_000005_300 Hb_001252_220--Hb_003020_150 Hb_001979_020 Hb_001979_020 Hb_003020_150--Hb_001979_020 Hb_000163_050 Hb_000163_050 Hb_003020_150--Hb_000163_050 Hb_002232_060 Hb_002232_060 Hb_003020_150--Hb_002232_060 Hb_002016_080 Hb_002016_080 Hb_003020_150--Hb_002016_080 Hb_003880_030 Hb_003880_030 Hb_003020_150--Hb_003880_030 Hb_006478_160 Hb_006478_160 Hb_000731_190--Hb_006478_160 Hb_000417_360 Hb_000417_360 Hb_000731_190--Hb_000417_360 Hb_000571_020 Hb_000571_020 Hb_000731_190--Hb_000571_020 Hb_091433_020 Hb_091433_020 Hb_000731_190--Hb_091433_020 Hb_001979_040 Hb_001979_040 Hb_000731_190--Hb_001979_040 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_000402_160 Hb_000402_160 Hb_001493_050--Hb_000402_160 Hb_004157_020 Hb_004157_020 Hb_001493_050--Hb_004157_020 Hb_000676_390 Hb_000676_390 Hb_001493_050--Hb_000676_390 Hb_002226_060 Hb_002226_060 Hb_001493_050--Hb_002226_060 Hb_001493_050--Hb_000731_190 Hb_002540_080 Hb_002540_080 Hb_001493_050--Hb_002540_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9898 29.322 54.2594 24.9963 15.0449 8.36248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.5003 114.581 48.6641 28.5889 28.3755

CAGE analysis