Hb_002260_020

Information

Type -
Description -
Location Contig2260: 12018-14212
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23496: 11867-14192
cDNA
(Sanger)
(ID:Location)		 001_M21.ab1: 11867-14167

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_020 0.0 - - -
2 Hb_080477_060 0.1099725349 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008887_040 0.123309352 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
4 Hb_168711_010 0.1301779335 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
5 Hb_008705_090 0.1309392147 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
6 Hb_003349_070 0.1320566002 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
7 Hb_030954_020 0.1340442236 - - hypothetical protein RCOM_1330200 [Ricinus communis]
8 Hb_000091_100 0.1366674779 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_003777_230 0.1390895478 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
10 Hb_009659_020 0.1401513301 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
11 Hb_010166_020 0.1459962201 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
12 Hb_003050_070 0.1466832707 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004474_010 0.1511274458 - - unnamed protein product [Coffea canephora]
14 Hb_004635_060 0.1560878859 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
15 Hb_004223_260 0.159178221 - - hypothetical protein F383_09277 [Gossypium arboreum]
16 Hb_000106_100 0.162904321 - - -
17 Hb_103752_010 0.1646883536 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
18 Hb_000684_160 0.1671401253 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
19 Hb_001007_050 0.1673444527 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
20 Hb_104010_010 0.168163557 - - hypothetical protein JCGZ_26423 [Jatropha curcas]

Gene co-expression network

sample Hb_002260_020 Hb_002260_020 Hb_080477_060 Hb_080477_060 Hb_002260_020--Hb_080477_060 Hb_008887_040 Hb_008887_040 Hb_002260_020--Hb_008887_040 Hb_168711_010 Hb_168711_010 Hb_002260_020--Hb_168711_010 Hb_008705_090 Hb_008705_090 Hb_002260_020--Hb_008705_090 Hb_003349_070 Hb_003349_070 Hb_002260_020--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_002260_020--Hb_030954_020 Hb_080477_060--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_080477_060--Hb_009659_020 Hb_000091_100 Hb_000091_100 Hb_080477_060--Hb_000091_100 Hb_001623_430 Hb_001623_430 Hb_080477_060--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_080477_060--Hb_007520_060 Hb_000270_720 Hb_000270_720 Hb_008887_040--Hb_000270_720 Hb_004755_030 Hb_004755_030 Hb_008887_040--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_008887_040--Hb_000789_110 Hb_000159_070 Hb_000159_070 Hb_008887_040--Hb_000159_070 Hb_008887_040--Hb_168711_010 Hb_000635_080 Hb_000635_080 Hb_168711_010--Hb_000635_080 Hb_002248_100 Hb_002248_100 Hb_168711_010--Hb_002248_100 Hb_000172_420 Hb_000172_420 Hb_168711_010--Hb_000172_420 Hb_001434_070 Hb_001434_070 Hb_168711_010--Hb_001434_070 Hb_001007_050 Hb_001007_050 Hb_008705_090--Hb_001007_050 Hb_001723_080 Hb_001723_080 Hb_008705_090--Hb_001723_080 Hb_003777_230 Hb_003777_230 Hb_008705_090--Hb_003777_230 Hb_010172_100 Hb_010172_100 Hb_008705_090--Hb_010172_100 Hb_000454_110 Hb_000454_110 Hb_008705_090--Hb_000454_110 Hb_003349_070--Hb_001623_430 Hb_004223_260 Hb_004223_260 Hb_003349_070--Hb_004223_260 Hb_000106_100 Hb_000106_100 Hb_003349_070--Hb_000106_100 Hb_000819_070 Hb_000819_070 Hb_003349_070--Hb_000819_070 Hb_000085_330 Hb_000085_330 Hb_003349_070--Hb_000085_330 Hb_183086_040 Hb_183086_040 Hb_003349_070--Hb_183086_040 Hb_030954_020--Hb_009659_020 Hb_030954_020--Hb_001623_430 Hb_030954_020--Hb_183086_040 Hb_030954_020--Hb_003349_070 Hb_030954_020--Hb_000106_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1939 1.99864 2.84591 8.74578 16.3577 26.1777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.904 130.382 33.2553 6.27879 3.8515

CAGE analysis