Hb_002260_050

Information

Type -
Description -
Location Contig2260: 35422-46477
Sequence    

Annotation

kegg
ID rcu:RCOM_0818870
description hypothetical protein
nr
ID XP_002518345.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9S7V4
description HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1
trembl
ID B9RX76
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0818870 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hva22 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23501: 41252-44489 , PASA_asmbl_23502: 41756-42017 , PASA_asmbl_23503: 44504-46451
cDNA
(Sanger)
(ID:Location)		 051_M03.ab1: 41252-42915

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001322_130 0.0815908018 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
3 Hb_012490_090 0.0824120609 - - PREDICTED: myosin-17 [Jatropha curcas]
4 Hb_004410_120 0.0835995798 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
5 Hb_000174_290 0.0879617107 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
6 Hb_013358_010 0.0898009435 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
7 Hb_004553_030 0.0914960737 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
8 Hb_000949_020 0.0917489881 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
9 Hb_000313_120 0.0946146393 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
10 Hb_146224_010 0.096319506 - - conserved hypothetical protein [Ricinus communis]
11 Hb_143766_060 0.0978639705 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
12 Hb_000494_050 0.0993756985 - - cationic amino acid transporter, putative [Ricinus communis]
13 Hb_000014_050 0.1002148382 - - PREDICTED: V-type proton ATPase subunit B 2 [Elaeis guineensis]
14 Hb_000809_170 0.1007135206 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
15 Hb_000352_070 0.1025347194 - - Potassium transporter, putative [Ricinus communis]
16 Hb_031042_050 0.1028504182 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
17 Hb_000976_210 0.1043460208 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
18 Hb_001001_150 0.1054626004 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003729_030 0.1059340277 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
20 Hb_002217_170 0.1061170991 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_002260_050 Hb_002260_050 Hb_001322_130 Hb_001322_130 Hb_002260_050--Hb_001322_130 Hb_012490_090 Hb_012490_090 Hb_002260_050--Hb_012490_090 Hb_004410_120 Hb_004410_120 Hb_002260_050--Hb_004410_120 Hb_000174_290 Hb_000174_290 Hb_002260_050--Hb_000174_290 Hb_013358_010 Hb_013358_010 Hb_002260_050--Hb_013358_010 Hb_004553_030 Hb_004553_030 Hb_002260_050--Hb_004553_030 Hb_002253_080 Hb_002253_080 Hb_001322_130--Hb_002253_080 Hb_031042_050 Hb_031042_050 Hb_001322_130--Hb_031042_050 Hb_000866_460 Hb_000866_460 Hb_001322_130--Hb_000866_460 Hb_002267_140 Hb_002267_140 Hb_001322_130--Hb_002267_140 Hb_000243_210 Hb_000243_210 Hb_001322_130--Hb_000243_210 Hb_019430_020 Hb_019430_020 Hb_001322_130--Hb_019430_020 Hb_000215_140 Hb_000215_140 Hb_012490_090--Hb_000215_140 Hb_000313_120 Hb_000313_120 Hb_012490_090--Hb_000313_120 Hb_146224_010 Hb_146224_010 Hb_012490_090--Hb_146224_010 Hb_001217_050 Hb_001217_050 Hb_012490_090--Hb_001217_050 Hb_012490_090--Hb_013358_010 Hb_004410_120--Hb_031042_050 Hb_004410_120--Hb_013358_010 Hb_012055_040 Hb_012055_040 Hb_004410_120--Hb_012055_040 Hb_000037_220 Hb_000037_220 Hb_004410_120--Hb_000037_220 Hb_004410_120--Hb_001322_130 Hb_004410_120--Hb_000174_290 Hb_003729_030 Hb_003729_030 Hb_000174_290--Hb_003729_030 Hb_001235_230 Hb_001235_230 Hb_000174_290--Hb_001235_230 Hb_000005_070 Hb_000005_070 Hb_000174_290--Hb_000005_070 Hb_000174_290--Hb_019430_020 Hb_000174_290--Hb_001322_130 Hb_143766_060 Hb_143766_060 Hb_013358_010--Hb_143766_060 Hb_000260_070 Hb_000260_070 Hb_013358_010--Hb_000260_070 Hb_001628_070 Hb_001628_070 Hb_013358_010--Hb_001628_070 Hb_013358_010--Hb_000174_290 Hb_013358_010--Hb_001217_050 Hb_001195_530 Hb_001195_530 Hb_004553_030--Hb_001195_530 Hb_000809_170 Hb_000809_170 Hb_004553_030--Hb_000809_170 Hb_000402_230 Hb_000402_230 Hb_004553_030--Hb_000402_230 Hb_003666_020 Hb_003666_020 Hb_004553_030--Hb_003666_020 Hb_001258_020 Hb_001258_020 Hb_004553_030--Hb_001258_020 Hb_002217_170 Hb_002217_170 Hb_004553_030--Hb_002217_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.96946 24.8794 13.1249 16.1565 19.2555 13.1165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.06956 6.45984 18.3545 12.4857 13.0162

CAGE analysis