Hb_002260_080

Information

Type -
Description -
Location Contig2260: 98726-118351
Sequence    

Annotation

kegg
ID rcu:RCOM_0818850
description methylmalonate-semialdehyde dehydrogenase, putative (EC:1.2.1.27)
nr
ID XP_010112249.1
description Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
swissprot
ID Q0WM29
description Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2
trembl
ID W9SA81
description Aldehyde dehydrogenase family 6 member B2 OS=Morus notabilis GN=L484_014786 PE=3 SV=1
Gene Ontology
ID GO:0004491
description methylmalonate-semialdehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23506: 98753-106602 , PASA_asmbl_23508: 108017-108421 , PASA_asmbl_23509: 108424-115398 , PASA_asmbl_23511: 112635-113058 , PASA_asmbl_23513: 115922-118617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_080 0.0 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
2 Hb_118840_030 0.0615848257 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
3 Hb_001977_010 0.1060134776 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
4 Hb_011287_080 0.1137836754 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000046_180 0.1192693939 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
6 Hb_000158_100 0.1252583693 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011310_160 0.1257824517 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
8 Hb_000021_030 0.1260351678 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
9 Hb_030627_060 0.1262209445 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
10 Hb_007456_040 0.1272361851 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
11 Hb_058643_010 0.1281445413 - - hydrolase, putative [Ricinus communis]
12 Hb_000307_210 0.130006708 - - Transportin 1 isoform 1 [Theobroma cacao]
13 Hb_000284_120 0.1309458443 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
14 Hb_003913_110 0.1330099468 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
15 Hb_006478_060 0.1371999319 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
16 Hb_116929_010 0.1377852751 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
17 Hb_000680_110 0.1380148043 - - Endosomal P24A protein precursor, putative [Ricinus communis]
18 Hb_007186_020 0.1381598505 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
19 Hb_003060_060 0.1382190514 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
20 Hb_001621_130 0.1382257918 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002260_080 Hb_002260_080 Hb_118840_030 Hb_118840_030 Hb_002260_080--Hb_118840_030 Hb_001977_010 Hb_001977_010 Hb_002260_080--Hb_001977_010 Hb_011287_080 Hb_011287_080 Hb_002260_080--Hb_011287_080 Hb_000046_180 Hb_000046_180 Hb_002260_080--Hb_000046_180 Hb_000158_100 Hb_000158_100 Hb_002260_080--Hb_000158_100 Hb_011310_160 Hb_011310_160 Hb_002260_080--Hb_011310_160 Hb_118840_030--Hb_001977_010 Hb_118840_030--Hb_011287_080 Hb_030627_060 Hb_030627_060 Hb_118840_030--Hb_030627_060 Hb_000446_120 Hb_000446_120 Hb_118840_030--Hb_000446_120 Hb_118840_030--Hb_000046_180 Hb_002391_370 Hb_002391_370 Hb_001977_010--Hb_002391_370 Hb_001452_220 Hb_001452_220 Hb_001977_010--Hb_001452_220 Hb_002909_090 Hb_002909_090 Hb_001977_010--Hb_002909_090 Hb_001977_010--Hb_000158_100 Hb_000556_220 Hb_000556_220 Hb_011287_080--Hb_000556_220 Hb_061878_010 Hb_061878_010 Hb_011287_080--Hb_061878_010 Hb_000680_110 Hb_000680_110 Hb_011287_080--Hb_000680_110 Hb_041327_010 Hb_041327_010 Hb_011287_080--Hb_041327_010 Hb_003060_060 Hb_003060_060 Hb_011287_080--Hb_003060_060 Hb_003284_030 Hb_003284_030 Hb_000046_180--Hb_003284_030 Hb_000949_010 Hb_000949_010 Hb_000046_180--Hb_000949_010 Hb_001401_060 Hb_001401_060 Hb_000046_180--Hb_001401_060 Hb_174865_020 Hb_174865_020 Hb_000046_180--Hb_174865_020 Hb_011947_050 Hb_011947_050 Hb_000046_180--Hb_011947_050 Hb_002044_170 Hb_002044_170 Hb_000046_180--Hb_002044_170 Hb_000743_050 Hb_000743_050 Hb_000158_100--Hb_000743_050 Hb_003623_030 Hb_003623_030 Hb_000158_100--Hb_003623_030 Hb_000136_060 Hb_000136_060 Hb_000158_100--Hb_000136_060 Hb_002028_170 Hb_002028_170 Hb_000158_100--Hb_002028_170 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110 Hb_000398_120 Hb_000398_120 Hb_011310_160--Hb_000398_120 Hb_006660_010 Hb_006660_010 Hb_011310_160--Hb_006660_010 Hb_003988_010 Hb_003988_010 Hb_011310_160--Hb_003988_010 Hb_025477_040 Hb_025477_040 Hb_011310_160--Hb_025477_040 Hb_010174_040 Hb_010174_040 Hb_011310_160--Hb_010174_040 Hb_002974_060 Hb_002974_060 Hb_011310_160--Hb_002974_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9684 22.0969 8.31081 19.3945 36.9522 40.2332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03107 4.72537 13.5588 40.2914 19.7311

CAGE analysis