Hb_002260_090

Information

Type -
Description -
Location Contig2260: 121879-122712
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08240g
description POPTRDRAFT_767777; hypothetical protein
nr
ID XP_012074589.1
description PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
swissprot
ID Q0WNW4
description Myosin-binding protein 3 OS=Arabidopsis thaliana GN=MYOB3 PE=1 SV=1
trembl
ID B9HN81
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08240g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_090 0.0 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
2 Hb_014497_110 0.106381176 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
3 Hb_001213_120 0.1156912437 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
4 Hb_011671_400 0.1198360073 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
5 Hb_003052_040 0.1271070458 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012366_020 0.128443853 - - unnamed protein product [Vitis vinifera]
7 Hb_005908_040 0.1336859026 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
8 Hb_004297_040 0.1379329935 - - acyl CoA reductase [Hevea brasiliensis]
9 Hb_078633_010 0.139255389 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
10 Hb_000367_280 0.1428416498 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
11 Hb_004206_030 0.1433943952 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
12 Hb_000836_500 0.1486963119 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
13 Hb_005615_070 0.1489858484 - - Rab7 [Hevea brasiliensis]
14 Hb_001268_080 0.1519138692 - - catalytic, putative [Ricinus communis]
15 Hb_001102_250 0.1520448618 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
16 Hb_001012_040 0.1526091513 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
17 Hb_000178_110 0.1561721574 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000077_410 0.1567230001 - - protein with unknown function [Ricinus communis]
19 Hb_003060_030 0.1583737425 - - conserved hypothetical protein 16 [Hevea brasiliensis]
20 Hb_001279_130 0.1588751528 - - hypothetical protein L484_017676 [Morus notabilis]

Gene co-expression network

sample Hb_002260_090 Hb_002260_090 Hb_014497_110 Hb_014497_110 Hb_002260_090--Hb_014497_110 Hb_001213_120 Hb_001213_120 Hb_002260_090--Hb_001213_120 Hb_011671_400 Hb_011671_400 Hb_002260_090--Hb_011671_400 Hb_003052_040 Hb_003052_040 Hb_002260_090--Hb_003052_040 Hb_012366_020 Hb_012366_020 Hb_002260_090--Hb_012366_020 Hb_005908_040 Hb_005908_040 Hb_002260_090--Hb_005908_040 Hb_014497_110--Hb_001213_120 Hb_014497_110--Hb_012366_020 Hb_001012_040 Hb_001012_040 Hb_014497_110--Hb_001012_040 Hb_002983_030 Hb_002983_030 Hb_014497_110--Hb_002983_030 Hb_014497_110--Hb_003052_040 Hb_000367_280 Hb_000367_280 Hb_001213_120--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_001213_120--Hb_001268_080 Hb_078633_010 Hb_078633_010 Hb_001213_120--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_001213_120--Hb_004297_040 Hb_015934_020 Hb_015934_020 Hb_001213_120--Hb_015934_020 Hb_007810_030 Hb_007810_030 Hb_001213_120--Hb_007810_030 Hb_001276_060 Hb_001276_060 Hb_011671_400--Hb_001276_060 Hb_011671_400--Hb_078633_010 Hb_003095_070 Hb_003095_070 Hb_011671_400--Hb_003095_070 Hb_011671_400--Hb_003052_040 Hb_005000_160 Hb_005000_160 Hb_011671_400--Hb_005000_160 Hb_001396_190 Hb_001396_190 Hb_003052_040--Hb_001396_190 Hb_005914_070 Hb_005914_070 Hb_003052_040--Hb_005914_070 Hb_003052_040--Hb_078633_010 Hb_030765_020 Hb_030765_020 Hb_012366_020--Hb_030765_020 Hb_000003_840 Hb_000003_840 Hb_012366_020--Hb_000003_840 Hb_002936_050 Hb_002936_050 Hb_012366_020--Hb_002936_050 Hb_000836_500 Hb_000836_500 Hb_012366_020--Hb_000836_500 Hb_000178_110 Hb_000178_110 Hb_012366_020--Hb_000178_110 Hb_005137_020 Hb_005137_020 Hb_005908_040--Hb_005137_020 Hb_010172_100 Hb_010172_100 Hb_005908_040--Hb_010172_100 Hb_001102_250 Hb_001102_250 Hb_005908_040--Hb_001102_250 Hb_005908_040--Hb_004297_040 Hb_005908_040--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_005908_040--Hb_000544_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7065 2.46269 0.173408 0.117776 6.57199 7.66314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.1361 45.6128 39.4009 2.53808 0.101246

CAGE analysis