Hb_002260_140

Information

Type -
Description -
Location Contig2260: 214870-215478
Sequence    

Annotation

kegg
ID rcu:RCOM_0867390
description hypothetical protein
nr
ID XP_002519924.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S1Q9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0867390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001818_010 0.0478517067 - - Disease resistance response protein, putative [Ricinus communis]
3 Hb_009079_020 0.0608733971 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
4 Hb_135757_030 0.0675265161 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
5 Hb_001500_020 0.0765439438 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000172_450 0.0769099076 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
7 Hb_112950_010 0.0784103069 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
8 Hb_006351_050 0.0791957576 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
9 Hb_001789_230 0.0810781168 - - conserved hypothetical protein [Ricinus communis]
10 Hb_051212_020 0.0872844272 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
11 Hb_003598_050 0.0882419687 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_180088_010 0.0887420809 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_003175_120 0.0893890365 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
14 Hb_006153_140 0.0929097769 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
15 Hb_000866_130 0.0941281985 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
16 Hb_000408_060 0.0984411101 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
17 Hb_003090_220 0.0991267957 - - PREDICTED: copper transporter 4 [Jatropha curcas]
18 Hb_000497_080 0.1033478458 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000724_060 0.1041468116 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
20 Hb_000093_010 0.105471403 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]

Gene co-expression network

sample Hb_002260_140 Hb_002260_140 Hb_001818_010 Hb_001818_010 Hb_002260_140--Hb_001818_010 Hb_009079_020 Hb_009079_020 Hb_002260_140--Hb_009079_020 Hb_135757_030 Hb_135757_030 Hb_002260_140--Hb_135757_030 Hb_001500_020 Hb_001500_020 Hb_002260_140--Hb_001500_020 Hb_000172_450 Hb_000172_450 Hb_002260_140--Hb_000172_450 Hb_112950_010 Hb_112950_010 Hb_002260_140--Hb_112950_010 Hb_051212_020 Hb_051212_020 Hb_001818_010--Hb_051212_020 Hb_001818_010--Hb_009079_020 Hb_000866_130 Hb_000866_130 Hb_001818_010--Hb_000866_130 Hb_001818_010--Hb_112950_010 Hb_001818_010--Hb_135757_030 Hb_006153_140 Hb_006153_140 Hb_009079_020--Hb_006153_140 Hb_000724_060 Hb_000724_060 Hb_009079_020--Hb_000724_060 Hb_009079_020--Hb_112950_010 Hb_002686_220 Hb_002686_220 Hb_009079_020--Hb_002686_220 Hb_135757_030--Hb_001500_020 Hb_003175_120 Hb_003175_120 Hb_135757_030--Hb_003175_120 Hb_003598_050 Hb_003598_050 Hb_135757_030--Hb_003598_050 Hb_006351_050 Hb_006351_050 Hb_135757_030--Hb_006351_050 Hb_001500_020--Hb_006351_050 Hb_180088_010 Hb_180088_010 Hb_001500_020--Hb_180088_010 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_001500_020--Hb_000172_450 Hb_000172_450--Hb_006351_050 Hb_000172_450--Hb_180088_010 Hb_000172_450--Hb_135757_030 Hb_000172_450--Hb_112950_010 Hb_112950_010--Hb_003598_050 Hb_000083_200 Hb_000083_200 Hb_112950_010--Hb_000083_200 Hb_112950_010--Hb_002686_220 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040 Hb_112950_010--Hb_180088_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.06215 2.37515 11.3242 0.0828116 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.190842 1.807

CAGE analysis