Hb_002260_160

Information

Type -
Description -
Location Contig2260: 219730-226253
Sequence    

Annotation

kegg
ID rcu:RCOM_0818620
description hypothetical protein
nr
ID XP_002518340.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RX71
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0818620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23518: 224281-224395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_100180_010 0.1659771817 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
3 Hb_007218_100 0.1697395535 - - phosphofructokinase [Hevea brasiliensis]
4 Hb_004429_110 0.1974318428 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
5 Hb_004907_020 0.204655722 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
6 Hb_021888_120 0.2085533247 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
7 Hb_001140_240 0.2087682009 - - metal ion binding protein, putative [Ricinus communis]
8 Hb_003398_020 0.2145883324 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
9 Hb_003376_290 0.2157459063 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
10 Hb_000239_110 0.2232102115 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
11 Hb_002928_210 0.2275172339 - - -
12 Hb_005725_100 0.2306995761 - - hypothetical protein 30 [Hevea brasiliensis]
13 Hb_010827_020 0.2385410812 - - 60S ribosomal protein L17B [Hevea brasiliensis]
14 Hb_004545_130 0.2391867925 - - uncharacterized protein LOC100305465 [Glycine max]
15 Hb_000258_180 0.239301463 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
16 Hb_000012_070 0.2400070495 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000836_490 0.2405396315 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
18 Hb_004209_030 0.2433189345 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
19 Hb_002112_010 0.2459416891 - - hypothetical protein POPTR_0001s45830g [Populus trichocarpa]
20 Hb_003784_050 0.2472937228 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]

Gene co-expression network

sample Hb_002260_160 Hb_002260_160 Hb_100180_010 Hb_100180_010 Hb_002260_160--Hb_100180_010 Hb_007218_100 Hb_007218_100 Hb_002260_160--Hb_007218_100 Hb_004429_110 Hb_004429_110 Hb_002260_160--Hb_004429_110 Hb_004907_020 Hb_004907_020 Hb_002260_160--Hb_004907_020 Hb_021888_120 Hb_021888_120 Hb_002260_160--Hb_021888_120 Hb_001140_240 Hb_001140_240 Hb_002260_160--Hb_001140_240 Hb_100180_010--Hb_004429_110 Hb_004567_020 Hb_004567_020 Hb_100180_010--Hb_004567_020 Hb_001307_210 Hb_001307_210 Hb_100180_010--Hb_001307_210 Hb_100180_010--Hb_007218_100 Hb_000302_290 Hb_000302_290 Hb_100180_010--Hb_000302_290 Hb_000152_100 Hb_000152_100 Hb_007218_100--Hb_000152_100 Hb_010827_020 Hb_010827_020 Hb_007218_100--Hb_010827_020 Hb_007218_100--Hb_021888_120 Hb_001579_140 Hb_001579_140 Hb_007218_100--Hb_001579_140 Hb_000454_180 Hb_000454_180 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_000617_110 Hb_000617_110 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_002112_010 Hb_002112_010 Hb_004907_020--Hb_002112_010 Hb_000487_280 Hb_000487_280 Hb_004907_020--Hb_000487_280 Hb_004136_030 Hb_004136_030 Hb_004907_020--Hb_004136_030 Hb_000011_340 Hb_000011_340 Hb_004907_020--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_004907_020--Hb_001520_020 Hb_000096_130 Hb_000096_130 Hb_021888_120--Hb_000096_130 Hb_007951_130 Hb_007951_130 Hb_021888_120--Hb_007951_130 Hb_007317_080 Hb_007317_080 Hb_021888_120--Hb_007317_080 Hb_000692_020 Hb_000692_020 Hb_021888_120--Hb_000692_020 Hb_009954_050 Hb_009954_050 Hb_001140_240--Hb_009954_050 Hb_000500_210 Hb_000500_210 Hb_001140_240--Hb_000500_210 Hb_000804_030 Hb_000804_030 Hb_001140_240--Hb_000804_030 Hb_000012_070 Hb_000012_070 Hb_001140_240--Hb_000012_070 Hb_005725_100 Hb_005725_100 Hb_001140_240--Hb_005725_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0205173 0.201697 0.0994264 0.315594 0.0324477 0.0119506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89257 3.51569 0.513172 1.30776 0.0520286

CAGE analysis