Hb_002263_020

Information

Type -
Description -
Location Contig2263: 41069-49952
Sequence    

Annotation

kegg
ID pop:POPTR_0006s21070g
description POPTRDRAFT_717593; DEAD box RNA helicase family protein
nr
ID XP_012090844.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
swissprot
ID Q9M2F9
description DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana GN=RH52 PE=1 SV=1
trembl
ID A0A067JQS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03037 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 37-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23521: 41148-50072
cDNA
(Sanger)
(ID:Location)		 008_M08.ab1: 41158-42262

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002263_020 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
2 Hb_000138_100 0.0511449154 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
3 Hb_001902_030 0.0532412594 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
4 Hb_002592_060 0.056636119 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007426_110 0.0573743017 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
6 Hb_003517_040 0.0590248831 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
7 Hb_004109_080 0.0609028001 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
8 Hb_007657_010 0.0610001491 - - ATP binding protein, putative [Ricinus communis]
9 Hb_006483_110 0.0614548565 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
10 Hb_015807_050 0.0620712493 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
11 Hb_000340_530 0.0625142866 - - hypothetical protein VITISV_016664 [Vitis vinifera]
12 Hb_004254_090 0.0627240372 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
13 Hb_007645_100 0.0629550489 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
14 Hb_000347_430 0.0631695248 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
15 Hb_005291_050 0.0632274733 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
16 Hb_002217_250 0.0639031867 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001021_150 0.0639663206 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
18 Hb_001008_120 0.0645536259 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
19 Hb_000327_270 0.0656455133 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
20 Hb_008959_010 0.0658109158 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002263_020 Hb_002263_020 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_001902_030 Hb_001902_030 Hb_002263_020--Hb_001902_030 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_004109_080 Hb_004109_080 Hb_002263_020--Hb_004109_080 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_000138_100--Hb_003517_040 Hb_005291_050 Hb_005291_050 Hb_001902_030--Hb_005291_050 Hb_007657_010 Hb_007657_010 Hb_001902_030--Hb_007657_010 Hb_000331_260 Hb_000331_260 Hb_001902_030--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_001902_030--Hb_008847_030 Hb_001902_030--Hb_004109_080 Hb_001021_150 Hb_001021_150 Hb_002592_060--Hb_001021_150 Hb_002592_060--Hb_004846_220 Hb_002592_060--Hb_004254_090 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_006483_110 Hb_006483_110 Hb_002592_060--Hb_006483_110 Hb_007426_110--Hb_006483_110 Hb_028960_020 Hb_028960_020 Hb_007426_110--Hb_028960_020 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002218_090 Hb_002218_090 Hb_007426_110--Hb_002218_090 Hb_001655_030 Hb_001655_030 Hb_007426_110--Hb_001655_030 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_004567_090 Hb_004567_090 Hb_004109_080--Hb_004567_090 Hb_012498_010 Hb_012498_010 Hb_004109_080--Hb_012498_010 Hb_004109_080--Hb_005291_050 Hb_000340_530 Hb_000340_530 Hb_004109_080--Hb_000340_530 Hb_004109_080--Hb_000406_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.131 10.4195 10.7488 11.6125 12.8859 12.4529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6738 11.2765 12.157 12.5158 16.5004

CAGE analysis