Hb_002263_040

Information

Type -
Description -
Location Contig2263: 82326-94332
Sequence    

Annotation

kegg
ID rcu:RCOM_0041430
description carbon catabolite repressor protein, putative (EC:3.1.13.4)
nr
ID XP_002531170.1
description carbon catabolite repressor protein, putative [Ricinus communis]
swissprot
ID Q8W0Z9
description Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1
trembl
ID B9SYV1
description Carbon catabolite repressor protein, putative OS=Ricinus communis GN=RCOM_0041430 PE=4 SV=1
Gene Ontology
ID GO:0004519
description carbon catabolite repressor protein 4 homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23524: 82442-94277 , PASA_asmbl_23525: 91584-91993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002263_040 0.0 - - carbon catabolite repressor protein, putative [Ricinus communis]
2 Hb_000442_010 0.0627747713 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
3 Hb_002798_070 0.0652525503 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
4 Hb_002636_100 0.0699389327 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
5 Hb_002783_040 0.0744411475 transcription factor TF Family: IWS1 -
6 Hb_000061_030 0.0750258634 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
7 Hb_000977_120 0.0756335093 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
8 Hb_002329_020 0.0772140557 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
9 Hb_001828_130 0.081704225 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
10 Hb_009150_020 0.0821137989 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
11 Hb_011930_110 0.0831407402 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
12 Hb_001410_020 0.0839497654 - - cdk8, putative [Ricinus communis]
13 Hb_012779_090 0.084388432 - - PREDICTED: lipase member N [Jatropha curcas]
14 Hb_000243_250 0.08451435 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
15 Hb_000861_080 0.0846027432 - - PREDICTED: protein ELC-like [Jatropha curcas]
16 Hb_004440_040 0.0851694327 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_002411_030 0.0867820006 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
18 Hb_002235_300 0.0869670432 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
19 Hb_012194_030 0.0882513744 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
20 Hb_002253_080 0.0883967386 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002263_040 Hb_002263_040 Hb_000442_010 Hb_000442_010 Hb_002263_040--Hb_000442_010 Hb_002798_070 Hb_002798_070 Hb_002263_040--Hb_002798_070 Hb_002636_100 Hb_002636_100 Hb_002263_040--Hb_002636_100 Hb_002783_040 Hb_002783_040 Hb_002263_040--Hb_002783_040 Hb_000061_030 Hb_000061_030 Hb_002263_040--Hb_000061_030 Hb_000977_120 Hb_000977_120 Hb_002263_040--Hb_000977_120 Hb_000442_010--Hb_002798_070 Hb_001104_170 Hb_001104_170 Hb_000442_010--Hb_001104_170 Hb_005725_210 Hb_005725_210 Hb_000442_010--Hb_005725_210 Hb_005389_160 Hb_005389_160 Hb_000442_010--Hb_005389_160 Hb_000243_250 Hb_000243_250 Hb_000442_010--Hb_000243_250 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_002798_070--Hb_000243_250 Hb_002818_030 Hb_002818_030 Hb_002798_070--Hb_002818_030 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_008775_040 Hb_008775_040 Hb_002636_100--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_002636_100--Hb_000264_320 Hb_002636_100--Hb_002798_070 Hb_000322_150 Hb_000322_150 Hb_002636_100--Hb_000322_150 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_002234_170 Hb_002234_170 Hb_002783_040--Hb_002234_170 Hb_002783_040--Hb_000061_030 Hb_002253_080 Hb_002253_080 Hb_002783_040--Hb_002253_080 Hb_009150_020 Hb_009150_020 Hb_002783_040--Hb_009150_020 Hb_001322_130 Hb_001322_130 Hb_002783_040--Hb_001322_130 Hb_002329_020 Hb_002329_020 Hb_000061_030--Hb_002329_020 Hb_002267_140 Hb_002267_140 Hb_000061_030--Hb_002267_140 Hb_006275_020 Hb_006275_020 Hb_000061_030--Hb_006275_020 Hb_002843_120 Hb_002843_120 Hb_000061_030--Hb_002843_120 Hb_002235_300 Hb_002235_300 Hb_000977_120--Hb_002235_300 Hb_000977_120--Hb_002253_080 Hb_003729_030 Hb_003729_030 Hb_000977_120--Hb_003729_030 Hb_000321_150 Hb_000321_150 Hb_000977_120--Hb_000321_150 Hb_002615_090 Hb_002615_090 Hb_000977_120--Hb_002615_090 Hb_000025_320 Hb_000025_320 Hb_000977_120--Hb_000025_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.4167 82.3256 40.3058 22.7663 36.8178 37.4962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1423 30.9011 46.4398 25.9513 33.1271

CAGE analysis