Hb_002265_030

Information

Type -
Description -
Location Contig2265: 50313-51867
Sequence    

Annotation

kegg
ID gmx:100787885
description probable calcium-binding protein CML49-like
nr
ID XP_003535891.1
description PREDICTED: LOW QUALITY PROTEIN: probable calcium-binding protein CML49-like [Glycine max]
swissprot
ID Q5PQ53
description Peflin OS=Xenopus laevis GN=pef1 PE=1 SV=1
trembl
ID A0A0D3HR69
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23529: 50175-51640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002265_030 0.0 - - PREDICTED: LOW QUALITY PROTEIN: probable calcium-binding protein CML49-like [Glycine max]
2 Hb_005054_050 0.1707201326 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
3 Hb_000329_420 0.1718240626 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
4 Hb_000215_260 0.2079439521 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
5 Hb_004324_240 0.2510503529 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
6 Hb_001450_100 0.258763038 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
7 Hb_000522_140 0.2629922654 - - protein transporter, putative [Ricinus communis]
8 Hb_120662_010 0.2674016327 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
9 Hb_002124_020 0.2727093834 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
10 Hb_000252_090 0.2734043534 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
11 Hb_000640_140 0.2771227603 - - conserved hypothetical protein [Ricinus communis]
12 Hb_050686_010 0.2793056483 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001916_120 0.2810590875 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
14 Hb_000056_120 0.2844581068 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
15 Hb_089971_010 0.2872767461 - - PREDICTED: (S)-coclaurine N-methyltransferase [Cucumis sativus]
16 Hb_128496_010 0.2880775351 - - unnamed protein product [Vitis vinifera]
17 Hb_002783_250 0.2896523015 - - gibberellin-regulated protein 1-like precursor [Jatropha curcas]
18 Hb_054885_010 0.294149693 - - -
19 Hb_002235_130 0.2943562762 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012725_100 0.294837757 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002265_030 Hb_002265_030 Hb_005054_050 Hb_005054_050 Hb_002265_030--Hb_005054_050 Hb_000329_420 Hb_000329_420 Hb_002265_030--Hb_000329_420 Hb_000215_260 Hb_000215_260 Hb_002265_030--Hb_000215_260 Hb_004324_240 Hb_004324_240 Hb_002265_030--Hb_004324_240 Hb_001450_100 Hb_001450_100 Hb_002265_030--Hb_001450_100 Hb_000522_140 Hb_000522_140 Hb_002265_030--Hb_000522_140 Hb_005054_050--Hb_000215_260 Hb_001621_160 Hb_001621_160 Hb_005054_050--Hb_001621_160 Hb_005054_050--Hb_000329_420 Hb_120662_010 Hb_120662_010 Hb_005054_050--Hb_120662_010 Hb_002374_560 Hb_002374_560 Hb_005054_050--Hb_002374_560 Hb_000329_420--Hb_000215_260 Hb_001916_120 Hb_001916_120 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000252_090 Hb_000252_090 Hb_000329_420--Hb_000252_090 Hb_000056_230 Hb_000056_230 Hb_000329_420--Hb_000056_230 Hb_023327_030 Hb_023327_030 Hb_000215_260--Hb_023327_030 Hb_000497_230 Hb_000497_230 Hb_000215_260--Hb_000497_230 Hb_000215_260--Hb_004324_240 Hb_063716_010 Hb_063716_010 Hb_000215_260--Hb_063716_010 Hb_015026_060 Hb_015026_060 Hb_000215_260--Hb_015026_060 Hb_005460_030 Hb_005460_030 Hb_004324_240--Hb_005460_030 Hb_018954_020 Hb_018954_020 Hb_004324_240--Hb_018954_020 Hb_004324_240--Hb_001916_120 Hb_002159_030 Hb_002159_030 Hb_004324_240--Hb_002159_030 Hb_000016_030 Hb_000016_030 Hb_004324_240--Hb_000016_030 Hb_001450_100--Hb_000215_260 Hb_001983_010 Hb_001983_010 Hb_001450_100--Hb_001983_010 Hb_077211_010 Hb_077211_010 Hb_001450_100--Hb_077211_010 Hb_012725_100 Hb_012725_100 Hb_001450_100--Hb_012725_100 Hb_000099_210 Hb_000099_210 Hb_001450_100--Hb_000099_210 Hb_088428_010 Hb_088428_010 Hb_001450_100--Hb_088428_010 Hb_000850_040 Hb_000850_040 Hb_000522_140--Hb_000850_040 Hb_000522_140--Hb_000099_210 Hb_000136_130 Hb_000136_130 Hb_000522_140--Hb_000136_130 Hb_002235_130 Hb_002235_130 Hb_000522_140--Hb_002235_130 Hb_010964_020 Hb_010964_020 Hb_000522_140--Hb_010964_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0057 0.0794244 0.589047 18.3383 21.8502 17.9464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.543388 0.42731 4.15273 0.0191649 2.68997

CAGE analysis