Hb_002267_010

Information

Type -
Description -
Location Contig2267: 10089-10637
Sequence    

Annotation

kegg
ID fve:101294611
description putative ribonuclease H protein At1g65750-like
nr
ID XP_002468143.1
description hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
swissprot
ID -
description -
trembl
ID C5WQ76
description Putative uncharacterized protein Sb01g040370 OS=Sorghum bicolor GN=Sb01g040370 PE=4 SV=1
Gene Ontology
ID GO:0097159
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002267_010 0.0 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
2 Hb_052764_120 0.0458844131 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
3 Hb_071654_010 0.0531831952 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
4 Hb_048141_060 0.0559245848 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
5 Hb_000164_030 0.0822148327 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
6 Hb_002999_150 0.0857621531 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
7 Hb_002435_010 0.0861074949 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
8 Hb_004724_250 0.0972207643 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_012146_010 0.0975867889 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
10 Hb_055877_010 0.0986958996 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_010578_020 0.1003166493 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_003207_220 0.1045304608 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
13 Hb_007894_040 0.1108452699 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
14 Hb_005649_070 0.1144422693 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000668_190 0.1311540354 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
16 Hb_007747_070 0.1342617641 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
17 Hb_004241_140 0.1363487665 - - S-locus lectin protein kinase family protein, putative [Theobroma cacao]
18 Hb_107174_010 0.1413065097 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000251_170 0.1475597296 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
20 Hb_014700_020 0.151192941 - - tryptophan synthase beta chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_002267_010 Hb_002267_010 Hb_052764_120 Hb_052764_120 Hb_002267_010--Hb_052764_120 Hb_071654_010 Hb_071654_010 Hb_002267_010--Hb_071654_010 Hb_048141_060 Hb_048141_060 Hb_002267_010--Hb_048141_060 Hb_000164_030 Hb_000164_030 Hb_002267_010--Hb_000164_030 Hb_002999_150 Hb_002999_150 Hb_002267_010--Hb_002999_150 Hb_002435_010 Hb_002435_010 Hb_002267_010--Hb_002435_010 Hb_010578_020 Hb_010578_020 Hb_052764_120--Hb_010578_020 Hb_052764_120--Hb_002435_010 Hb_003207_220 Hb_003207_220 Hb_052764_120--Hb_003207_220 Hb_052764_120--Hb_002999_150 Hb_052764_120--Hb_048141_060 Hb_012146_010 Hb_012146_010 Hb_071654_010--Hb_012146_010 Hb_055877_010 Hb_055877_010 Hb_071654_010--Hb_055877_010 Hb_007894_040 Hb_007894_040 Hb_071654_010--Hb_007894_040 Hb_007747_070 Hb_007747_070 Hb_071654_010--Hb_007747_070 Hb_071654_010--Hb_002999_150 Hb_048141_060--Hb_000164_030 Hb_004724_250 Hb_004724_250 Hb_048141_060--Hb_004724_250 Hb_048141_060--Hb_071654_010 Hb_005649_070 Hb_005649_070 Hb_048141_060--Hb_005649_070 Hb_000164_030--Hb_004724_250 Hb_064971_010 Hb_064971_010 Hb_000164_030--Hb_064971_010 Hb_000164_030--Hb_005649_070 Hb_000157_060 Hb_000157_060 Hb_000164_030--Hb_000157_060 Hb_002999_150--Hb_003207_220 Hb_107174_010 Hb_107174_010 Hb_002999_150--Hb_107174_010 Hb_002999_150--Hb_007894_040 Hb_002435_010--Hb_010578_020 Hb_002435_010--Hb_003207_220 Hb_002435_010--Hb_048141_060 Hb_000668_190 Hb_000668_190 Hb_002435_010--Hb_000668_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0845468 0.389314 0.0583778 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis