Hb_002267_040

Information

Type -
Description -
Location Contig2267: 50827-51649
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002267_040 0.0 - - -
2 Hb_062226_080 0.0242875762 - - -
3 Hb_005888_040 0.0251660878 - - PREDICTED: gibberellin 20 oxidase 2 [Jatropha curcas]
4 Hb_015026_010 0.0410128807 - - -
5 Hb_009252_110 0.04107939 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
6 Hb_066350_010 0.0678015983 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
7 Hb_000501_090 0.0853005005 - - -
8 Hb_105446_010 0.1002181881 - - -
9 Hb_000658_020 0.1193210571 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
10 Hb_001645_100 0.1249066067 - - -
11 Hb_004724_010 0.1270928741 - - -
12 Hb_112011_010 0.1299881926 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_012879_010 0.1322718477 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000504_050 0.1324490101 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
15 Hb_000751_210 0.1340047762 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
16 Hb_005900_020 0.1424140653 - - -
17 Hb_017866_010 0.1506611831 - - kinase family protein [Populus trichocarpa]
18 Hb_000146_100 0.1512242824 - - conserved hypothetical protein [Ricinus communis]
19 Hb_132438_010 0.1521687206 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
20 Hb_004590_010 0.1597952789 - - hypothetical protein JCGZ_17178 [Jatropha curcas]

Gene co-expression network

sample Hb_002267_040 Hb_002267_040 Hb_062226_080 Hb_062226_080 Hb_002267_040--Hb_062226_080 Hb_005888_040 Hb_005888_040 Hb_002267_040--Hb_005888_040 Hb_015026_010 Hb_015026_010 Hb_002267_040--Hb_015026_010 Hb_009252_110 Hb_009252_110 Hb_002267_040--Hb_009252_110 Hb_066350_010 Hb_066350_010 Hb_002267_040--Hb_066350_010 Hb_000501_090 Hb_000501_090 Hb_002267_040--Hb_000501_090 Hb_062226_080--Hb_005888_040 Hb_062226_080--Hb_015026_010 Hb_062226_080--Hb_009252_110 Hb_105446_010 Hb_105446_010 Hb_062226_080--Hb_105446_010 Hb_062226_080--Hb_066350_010 Hb_005888_040--Hb_009252_110 Hb_005888_040--Hb_015026_010 Hb_005888_040--Hb_105446_010 Hb_005888_040--Hb_066350_010 Hb_015026_010--Hb_000501_090 Hb_015026_010--Hb_009252_110 Hb_015026_010--Hb_066350_010 Hb_009252_110--Hb_105446_010 Hb_009252_110--Hb_066350_010 Hb_066350_010--Hb_000501_090 Hb_001645_100 Hb_001645_100 Hb_000501_090--Hb_001645_100 Hb_000501_090--Hb_062226_080 Hb_000501_090--Hb_005888_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.093964 0 0.154285 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0344054 0

CAGE analysis