Hb_002267_120

Information

Type -
Description -
Location Contig2267: 101967-102947
Sequence    

Annotation

kegg
ID fve:101310236
description uncharacterized protein LOC101310236
nr
ID KJB56794.1
description hypothetical protein B456_009G136300 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TJB3
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G136300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002267_120 0.0 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
2 Hb_006971_080 0.0192518391 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_008226_110 0.0823704144 - - uncharacterized protein LOC100501343 [Zea mays]
4 Hb_005392_100 0.1423250003 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
5 Hb_147355_030 0.1652926591 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
6 Hb_082960_020 0.1950401214 - - hypothetical protein B456_012G107300 [Gossypium raimondii]
7 Hb_003455_010 0.2064771022 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
8 Hb_113803_010 0.2119922261 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002942_180 0.2294792175 - - phosphate transporter [Manihot esculenta]
10 Hb_131652_010 0.2778162306 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
11 Hb_099448_010 0.2820769722 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_000565_010 0.2913528364 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
13 Hb_005597_010 0.2922924733 - - -
14 Hb_000416_120 0.2933165114 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
15 Hb_004770_060 0.305636845 - - unnamed protein product, partial [Coffea canephora]
16 Hb_000248_090 0.3096578833 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
17 Hb_005656_110 0.309913426 - - cytochrome P450, putative [Ricinus communis]
18 Hb_004607_010 0.3105810973 - - -
19 Hb_003938_220 0.31078316 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_002903_030 0.3139976048 - - polyphenol oxidase [Cydonia oblonga]

Gene co-expression network

sample Hb_002267_120 Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_002267_120--Hb_006971_080 Hb_008226_110 Hb_008226_110 Hb_002267_120--Hb_008226_110 Hb_005392_100 Hb_005392_100 Hb_002267_120--Hb_005392_100 Hb_147355_030 Hb_147355_030 Hb_002267_120--Hb_147355_030 Hb_082960_020 Hb_082960_020 Hb_002267_120--Hb_082960_020 Hb_003455_010 Hb_003455_010 Hb_002267_120--Hb_003455_010 Hb_006971_080--Hb_008226_110 Hb_006971_080--Hb_005392_100 Hb_006971_080--Hb_147355_030 Hb_006971_080--Hb_082960_020 Hb_002942_180 Hb_002942_180 Hb_006971_080--Hb_002942_180 Hb_008226_110--Hb_005392_100 Hb_008226_110--Hb_002942_180 Hb_008226_110--Hb_147355_030 Hb_131652_010 Hb_131652_010 Hb_008226_110--Hb_131652_010 Hb_005392_100--Hb_147355_030 Hb_005392_100--Hb_002942_180 Hb_005392_100--Hb_131652_010 Hb_113803_010 Hb_113803_010 Hb_147355_030--Hb_113803_010 Hb_012355_010 Hb_012355_010 Hb_147355_030--Hb_012355_010 Hb_082960_020--Hb_113803_010 Hb_082960_020--Hb_147355_030 Hb_082960_020--Hb_008226_110 Hb_082960_020--Hb_003455_010 Hb_003455_010--Hb_006971_080 Hb_004770_060 Hb_004770_060 Hb_003455_010--Hb_004770_060 Hb_005854_050 Hb_005854_050 Hb_003455_010--Hb_005854_050 Hb_030885_020 Hb_030885_020 Hb_003455_010--Hb_030885_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.168226 0 0.0872436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.231837 0

CAGE analysis