Hb_002269_030

Information

Type -
Description -
Location Contig2269: 42212-50381
Sequence    

Annotation

kegg
ID tcc:TCM_010287
description Auxin-induced protein 5NG4, putative
nr
ID KDO82558.1
description hypothetical protein CISIN_1g018400mg [Citrus sinensis]
swissprot
ID Q9FL08
description WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1
trembl
ID A0A067GS59
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018400mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description auxin-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002269_030 0.0 - - hypothetical protein CISIN_1g018400mg [Citrus sinensis]
2 Hb_002171_070 0.1437938825 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
3 Hb_001514_210 0.1485755951 - - hypothetical protein VITISV_012133 [Vitis vinifera]
4 Hb_000625_060 0.1486226877 - - Protein P21, putative [Ricinus communis]
5 Hb_001621_020 0.1522876938 - - -
6 Hb_001355_110 0.157745351 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
7 Hb_002686_390 0.1597457393 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
8 Hb_001623_470 0.1627328223 - - ammonium transporter, putative [Ricinus communis]
9 Hb_001266_020 0.1631444347 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
10 Hb_001769_030 0.1659574286 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
11 Hb_000723_120 0.1670135622 - - PREDICTED: UDP-glycosyltransferase 86A1 [Jatropha curcas]
12 Hb_079158_010 0.1677629821 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
13 Hb_001596_040 0.1730151426 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
14 Hb_006949_030 0.1751125599 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_001102_270 0.1777200174 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
16 Hb_002917_030 0.1786885995 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
17 Hb_008020_010 0.1792292303 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
18 Hb_000010_200 0.1801953142 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_000254_040 0.1803839209 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
20 Hb_162286_030 0.1818702653 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]

Gene co-expression network

sample Hb_002269_030 Hb_002269_030 Hb_002171_070 Hb_002171_070 Hb_002269_030--Hb_002171_070 Hb_001514_210 Hb_001514_210 Hb_002269_030--Hb_001514_210 Hb_000625_060 Hb_000625_060 Hb_002269_030--Hb_000625_060 Hb_001621_020 Hb_001621_020 Hb_002269_030--Hb_001621_020 Hb_001355_110 Hb_001355_110 Hb_002269_030--Hb_001355_110 Hb_002686_390 Hb_002686_390 Hb_002269_030--Hb_002686_390 Hb_001596_040 Hb_001596_040 Hb_002171_070--Hb_001596_040 Hb_001013_040 Hb_001013_040 Hb_002171_070--Hb_001013_040 Hb_012019_020 Hb_012019_020 Hb_002171_070--Hb_012019_020 Hb_000556_200 Hb_000556_200 Hb_002171_070--Hb_000556_200 Hb_000462_020 Hb_000462_020 Hb_002171_070--Hb_000462_020 Hb_012753_200 Hb_012753_200 Hb_001514_210--Hb_012753_200 Hb_000085_230 Hb_000085_230 Hb_001514_210--Hb_000085_230 Hb_000579_180 Hb_000579_180 Hb_001514_210--Hb_000579_180 Hb_002805_150 Hb_002805_150 Hb_001514_210--Hb_002805_150 Hb_001514_210--Hb_002686_390 Hb_003031_030 Hb_003031_030 Hb_001514_210--Hb_003031_030 Hb_005186_090 Hb_005186_090 Hb_000625_060--Hb_005186_090 Hb_010578_050 Hb_010578_050 Hb_000625_060--Hb_010578_050 Hb_004657_040 Hb_004657_040 Hb_000625_060--Hb_004657_040 Hb_000625_060--Hb_001514_210 Hb_000030_260 Hb_000030_260 Hb_000625_060--Hb_000030_260 Hb_162286_030 Hb_162286_030 Hb_000625_060--Hb_162286_030 Hb_001621_020--Hb_001355_110 Hb_006949_030 Hb_006949_030 Hb_001621_020--Hb_006949_030 Hb_001102_270 Hb_001102_270 Hb_001621_020--Hb_001102_270 Hb_004079_110 Hb_004079_110 Hb_001621_020--Hb_004079_110 Hb_001621_020--Hb_162286_030 Hb_001266_020 Hb_001266_020 Hb_001621_020--Hb_001266_020 Hb_001355_110--Hb_001266_020 Hb_001623_470 Hb_001623_470 Hb_001355_110--Hb_001623_470 Hb_001355_110--Hb_001102_270 Hb_001355_110--Hb_012753_200 Hb_000489_020 Hb_000489_020 Hb_001355_110--Hb_000489_020 Hb_000010_200 Hb_000010_200 Hb_002686_390--Hb_000010_200 Hb_000254_040 Hb_000254_040 Hb_002686_390--Hb_000254_040 Hb_006711_020 Hb_006711_020 Hb_002686_390--Hb_006711_020 Hb_002686_390--Hb_006949_030 Hb_004884_200 Hb_004884_200 Hb_002686_390--Hb_004884_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0971132 2.03605 0.878515 0.151298 0.0130486 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0296584 0 0.0439127 2.84833 0.244523

CAGE analysis