Hb_002270_010

Information

Type -
Description -
Location Contig2270: 11597-14705
Sequence    

Annotation

kegg
ID rcu:RCOM_0940570
description Chaperone protein dnaJ, putative
nr
ID XP_002514419.1
description Chaperone protein dnaJ, putative [Ricinus communis]
swissprot
ID Q04960
description DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1
trembl
ID Q0PGF2
description Chaperone protein dnaJ, putative OS=Ricinus communis GN=RCOM_0940570 PE=2 SV=1
Gene Ontology
ID GO:0005524
description dnaj protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23659: 11537-14711 , PASA_asmbl_23660: 13209-13431
cDNA
(Sanger)
(ID:Location)		 001_F10.ab1: 11594-13163 , 002_H19.ab1: 11594-13130 , 002_I22.ab1: 11594-13170 , 002_J04.ab1: 11594-12866 , 003_M11.ab1: 11594-13141 , 004_E11.ab1: 11594-13170 , 004_O16.ab1: 11594-13114 , 007_M11.ab1: 11594-13131 , 015_K15.ab1: 11594-12997 , 018_C03.ab1: 11594-13156 , 018_N18.ab1: 14329-14708 , 021_E06.ab1: 14327-14708 , 022_M10.ab1: 11597-12868 , 023_D16.ab1: 11594-13123 , 023_P09.ab1: 11594-12866 , 024_E13.ab1: 11597-12823 , 030_O03.ab1: 11597-13159 , 033_A03.ab1: 12822-14340 , 034_A08.ab1: 11594-13142 , 036_P16.ab1: 11594-13105 , 037_K02.ab1: 11594-13170 , 038_M17.ab1: 11594-13138 , 040_F24.ab1: 11594-13141 , 044_C13.ab1: 11594-13192 , 047_I16.ab1: 14322-14583 , 049_A11.ab1: 11594-13047 , 049_I06.ab1: 11594-13115

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002270_010 0.0 - - Chaperone protein dnaJ, putative [Ricinus communis]
2 Hb_005144_040 0.0668264797 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
3 Hb_000076_290 0.0760679083 - - translation factor sui1, putative [Ricinus communis]
4 Hb_000172_550 0.0845371973 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
5 Hb_000735_120 0.0903436498 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
6 Hb_001439_180 0.091206443 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
7 Hb_015401_020 0.0936194036 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_042083_070 0.0939014703 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
9 Hb_000174_200 0.0943909876 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
10 Hb_000920_040 0.0957713289 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
11 Hb_000331_480 0.0990805129 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
12 Hb_001623_550 0.1017044687 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
13 Hb_001498_030 0.1025576105 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
14 Hb_005147_110 0.1031952421 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
15 Hb_005295_040 0.1032853004 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
16 Hb_009404_010 0.1036564483 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
17 Hb_001431_070 0.1042869297 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
18 Hb_000209_020 0.107111099 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
19 Hb_000186_040 0.1074452137 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000640_210 0.1080080014 - - hypothetical protein JCGZ_14045 [Jatropha curcas]

Gene co-expression network

sample Hb_002270_010 Hb_002270_010 Hb_005144_040 Hb_005144_040 Hb_002270_010--Hb_005144_040 Hb_000076_290 Hb_000076_290 Hb_002270_010--Hb_000076_290 Hb_000172_550 Hb_000172_550 Hb_002270_010--Hb_000172_550 Hb_000735_120 Hb_000735_120 Hb_002270_010--Hb_000735_120 Hb_001439_180 Hb_001439_180 Hb_002270_010--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_002270_010--Hb_015401_020 Hb_001498_030 Hb_001498_030 Hb_005144_040--Hb_001498_030 Hb_005144_040--Hb_000076_290 Hb_000640_210 Hb_000640_210 Hb_005144_040--Hb_000640_210 Hb_000174_200 Hb_000174_200 Hb_005144_040--Hb_000174_200 Hb_009404_010 Hb_009404_010 Hb_005144_040--Hb_009404_010 Hb_000076_290--Hb_000174_200 Hb_004032_350 Hb_004032_350 Hb_000076_290--Hb_004032_350 Hb_000076_290--Hb_000640_210 Hb_000076_290--Hb_001439_180 Hb_000076_290--Hb_015401_020 Hb_000029_160 Hb_000029_160 Hb_000172_550--Hb_000029_160 Hb_000172_550--Hb_000076_290 Hb_000172_550--Hb_004032_350 Hb_002725_070 Hb_002725_070 Hb_000172_550--Hb_002725_070 Hb_002820_040 Hb_002820_040 Hb_000172_550--Hb_002820_040 Hb_005295_040 Hb_005295_040 Hb_000172_550--Hb_005295_040 Hb_000046_450 Hb_000046_450 Hb_000735_120--Hb_000046_450 Hb_000367_290 Hb_000367_290 Hb_000735_120--Hb_000367_290 Hb_000735_120--Hb_000172_550 Hb_000116_280 Hb_000116_280 Hb_000735_120--Hb_000116_280 Hb_005399_020 Hb_005399_020 Hb_000735_120--Hb_005399_020 Hb_001034_020 Hb_001034_020 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040 Hb_015401_020--Hb_000174_200 Hb_001274_020 Hb_001274_020 Hb_015401_020--Hb_001274_020 Hb_015401_020--Hb_001439_180 Hb_005314_010 Hb_005314_010 Hb_015401_020--Hb_005314_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9618.97 4513.87 607.263 1482.17 5628.79 8640.88
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3669.01 1868.01 3562.52 2540.39 673.146

CAGE analysis