Hb_002271_010

Information

Type -
Description -
Location Contig2271: 29372-31074
Sequence    

Annotation

kegg
ID rcu:RCOM_1544580
description 60S ribosomal protein L8, putative
nr
ID XP_012068495.1
description PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
swissprot
ID P29766
description 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1
trembl
ID A0A067LAD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03170 PE=4 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23661: 29363-30968
cDNA
(Sanger)
(ID:Location)		 006_A21.ab1: 29371-30666 , 010_E15.ab1: 29371-30679 , 014_J13.ab1: 29367-30455 , 033_F16.ab1: 29367-30654 , 035_H14.ab1: 29363-30702 , 048_N05.ab1: 29367-30705

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002271_010 0.0 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
2 Hb_002232_360 0.0793315573 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
3 Hb_001671_100 0.0852519801 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
4 Hb_002534_120 0.0899168978 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
5 Hb_002400_340 0.0903879166 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
6 Hb_111036_010 0.091484599 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
7 Hb_000905_110 0.0959385509 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
8 Hb_000739_300 0.0977920626 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
9 Hb_000589_120 0.0989320572 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
10 Hb_004712_210 0.0990569903 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
11 Hb_000212_460 0.0992519046 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
12 Hb_000392_430 0.0997562708 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
13 Hb_001314_050 0.1016674882 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
14 Hb_002439_010 0.1032055627 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
15 Hb_000329_800 0.1039891446 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001021_150 0.1039962771 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
17 Hb_008847_030 0.1042822052 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
18 Hb_164390_010 0.105683185 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
19 Hb_000948_160 0.1064642444 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
20 Hb_003228_110 0.1067952358 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]

Gene co-expression network

sample Hb_002271_010 Hb_002271_010 Hb_002232_360 Hb_002232_360 Hb_002271_010--Hb_002232_360 Hb_001671_100 Hb_001671_100 Hb_002271_010--Hb_001671_100 Hb_002534_120 Hb_002534_120 Hb_002271_010--Hb_002534_120 Hb_002400_340 Hb_002400_340 Hb_002271_010--Hb_002400_340 Hb_111036_010 Hb_111036_010 Hb_002271_010--Hb_111036_010 Hb_000905_110 Hb_000905_110 Hb_002271_010--Hb_000905_110 Hb_002232_360--Hb_001671_100 Hb_000363_190 Hb_000363_190 Hb_002232_360--Hb_000363_190 Hb_001999_310 Hb_001999_310 Hb_002232_360--Hb_001999_310 Hb_029243_030 Hb_029243_030 Hb_002232_360--Hb_029243_030 Hb_000392_430 Hb_000392_430 Hb_002232_360--Hb_000392_430 Hb_001828_180 Hb_001828_180 Hb_002232_360--Hb_001828_180 Hb_007416_120 Hb_007416_120 Hb_001671_100--Hb_007416_120 Hb_001876_050 Hb_001876_050 Hb_001671_100--Hb_001876_050 Hb_001671_100--Hb_001999_310 Hb_001671_100--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_001671_100--Hb_001314_050 Hb_000504_070 Hb_000504_070 Hb_002534_120--Hb_000504_070 Hb_002534_120--Hb_002232_360 Hb_002534_120--Hb_001671_100 Hb_002534_120--Hb_000392_430 Hb_002534_120--Hb_007416_120 Hb_164390_010 Hb_164390_010 Hb_002400_340--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_002400_340--Hb_004109_320 Hb_000339_040 Hb_000339_040 Hb_002400_340--Hb_000339_040 Hb_163175_010 Hb_163175_010 Hb_002400_340--Hb_163175_010 Hb_001456_060 Hb_001456_060 Hb_002400_340--Hb_001456_060 Hb_171900_090 Hb_171900_090 Hb_002400_340--Hb_171900_090 Hb_000270_470 Hb_000270_470 Hb_111036_010--Hb_000270_470 Hb_002439_010 Hb_002439_010 Hb_111036_010--Hb_002439_010 Hb_000875_080 Hb_000875_080 Hb_111036_010--Hb_000875_080 Hb_003942_020 Hb_003942_020 Hb_111036_010--Hb_003942_020 Hb_003678_020 Hb_003678_020 Hb_111036_010--Hb_003678_020 Hb_000336_210 Hb_000336_210 Hb_000905_110--Hb_000336_210 Hb_008847_030 Hb_008847_030 Hb_000905_110--Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_000905_110--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_000905_110--Hb_014834_150 Hb_123915_040 Hb_123915_040 Hb_000905_110--Hb_123915_040 Hb_021419_030 Hb_021419_030 Hb_000905_110--Hb_021419_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.1734 107.522 145.121 111.248 109.662 129.834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.4097 236.628 107.531 215.59 134.344

CAGE analysis