Hb_002271_020

Information

Type -
Description -
Location Contig2271: 36406-39799
Sequence    

Annotation

kegg
ID mdm:103420554
description vacuolar protein sorting-associated protein 36-like
nr
ID KCW65138.1
description hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
swissprot
ID Q7ZVK4
description Vacuolar protein-sorting-associated protein 36 OS=Danio rerio GN=vps36 PE=2 SV=1
trembl
ID A0A059BG99
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02641 PE=4 SV=1
Gene Ontology
ID GO:0000814
description vacuolar protein sorting-associated protein 36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23665: 36423-83021 , PASA_asmbl_23666: 38829-83021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002271_020 0.0 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
2 Hb_002473_130 0.0502823117 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
3 Hb_143398_010 0.0526949738 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
4 Hb_005291_030 0.0624182698 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
5 Hb_001287_080 0.0654469478 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005489_060 0.0738166194 - - Anamorsin, putative [Ricinus communis]
7 Hb_001279_150 0.0779563286 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
8 Hb_002303_070 0.0780142349 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
9 Hb_033594_120 0.0797526834 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
10 Hb_001638_170 0.0798348443 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
11 Hb_010180_010 0.0798820629 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
12 Hb_003226_140 0.0817365737 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
13 Hb_000056_260 0.082730888 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
14 Hb_003633_030 0.0830626765 - - f-actin capping protein alpha, putative [Ricinus communis]
15 Hb_009557_070 0.0834864365 - - conserved hypothetical protein [Ricinus communis]
16 Hb_020665_040 0.0843744223 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
17 Hb_001221_100 0.0846403966 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
18 Hb_000215_110 0.0876492682 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
19 Hb_001842_100 0.0880900389 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
20 Hb_008406_190 0.0884857722 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002271_020 Hb_002271_020 Hb_002473_130 Hb_002473_130 Hb_002271_020--Hb_002473_130 Hb_143398_010 Hb_143398_010 Hb_002271_020--Hb_143398_010 Hb_005291_030 Hb_005291_030 Hb_002271_020--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_002271_020--Hb_001287_080 Hb_005489_060 Hb_005489_060 Hb_002271_020--Hb_005489_060 Hb_001279_150 Hb_001279_150 Hb_002271_020--Hb_001279_150 Hb_003226_140 Hb_003226_140 Hb_002473_130--Hb_003226_140 Hb_002473_130--Hb_143398_010 Hb_002473_130--Hb_005291_030 Hb_002473_130--Hb_001279_150 Hb_002473_130--Hb_005489_060 Hb_010180_010 Hb_010180_010 Hb_143398_010--Hb_010180_010 Hb_009557_070 Hb_009557_070 Hb_143398_010--Hb_009557_070 Hb_000045_090 Hb_000045_090 Hb_143398_010--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_143398_010--Hb_000329_030 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_001287_080--Hb_143398_010 Hb_001287_080--Hb_005291_030 Hb_001357_150 Hb_001357_150 Hb_001287_080--Hb_001357_150 Hb_033594_120 Hb_033594_120 Hb_001287_080--Hb_033594_120 Hb_007451_010 Hb_007451_010 Hb_001287_080--Hb_007451_010 Hb_005489_060--Hb_001279_150 Hb_002182_080 Hb_002182_080 Hb_005489_060--Hb_002182_080 Hb_000215_110 Hb_000215_110 Hb_005489_060--Hb_000215_110 Hb_000783_010 Hb_000783_010 Hb_005489_060--Hb_000783_010 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_001279_150--Hb_000215_110 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_001279_150--Hb_002182_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6927 8.24019 9.27426 15.5533 12.0303 24.2082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8987 18.8187 9.8931 12.7171 8.04267

CAGE analysis