Hb_002271_030

Information

Type -
Description -
Location Contig2271: 82084-83051
Sequence    

Annotation

kegg
ID rcu:RCOM_0904150
description Vacuolar protein sorting protein, putative
nr
ID XP_002518467.1
description Vacuolar protein sorting protein, putative [Ricinus communis]
swissprot
ID Q9FF81
description Vacuolar protein sorting-associated protein 36 OS=Arabidopsis thaliana GN=VPS36 PE=1 SV=1
trembl
ID B9RXJ8
description Vacuolar protein sorting protein, putative OS=Ricinus communis GN=RCOM_0904150 PE=4 SV=1
Gene Ontology
ID GO:0032266
description vacuolar protein sorting-associated protein 36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23665: 36423-83021 , PASA_asmbl_23666: 38829-83021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002271_030 0.0 - - Vacuolar protein sorting protein, putative [Ricinus communis]
2 Hb_004410_030 0.0586109708 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000011_200 0.0616363876 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
4 Hb_003025_110 0.0654082112 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
5 Hb_000225_040 0.0690757715 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_030736_100 0.070435849 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001493_030 0.0728293156 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
8 Hb_000193_190 0.0734233818 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
9 Hb_009467_060 0.0742645052 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
10 Hb_007575_050 0.0747359237 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
11 Hb_016898_010 0.0754248135 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
12 Hb_000347_070 0.0754743974 - - conserved hypothetical protein [Ricinus communis]
13 Hb_044728_010 0.0757482816 - - -
14 Hb_002025_020 0.0757568696 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
15 Hb_004619_030 0.0766329154 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
16 Hb_000617_180 0.077219511 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_001141_020 0.077938649 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
18 Hb_002890_020 0.0783714521 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
19 Hb_000820_170 0.0792647084 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
20 Hb_000028_480 0.0794363712 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]

Gene co-expression network

sample Hb_002271_030 Hb_002271_030 Hb_004410_030 Hb_004410_030 Hb_002271_030--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_002271_030--Hb_000011_200 Hb_003025_110 Hb_003025_110 Hb_002271_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_002271_030--Hb_000225_040 Hb_030736_100 Hb_030736_100 Hb_002271_030--Hb_030736_100 Hb_001493_030 Hb_001493_030 Hb_002271_030--Hb_001493_030 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_004410_030--Hb_000011_200 Hb_004410_030--Hb_003025_110 Hb_004410_030--Hb_000225_040 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030 Hb_000011_200--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000011_200--Hb_000193_190 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_003939_050 Hb_003939_050 Hb_030736_100--Hb_003939_050 Hb_030736_100--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_030736_100--Hb_000883_020 Hb_000575_040 Hb_000575_040 Hb_030736_100--Hb_000575_040 Hb_000879_200 Hb_000879_200 Hb_030736_100--Hb_000879_200 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_001493_030--Hb_007317_110 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0325 11.9927 12.1962 12.195 26.0009 31.0273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6537 17.2853 21.5588 23.431 18.1693

CAGE analysis