Hb_002272_010

Information

Type -
Description -
Location Contig2272: 4844-6879
Sequence    

Annotation

kegg
ID rcu:RCOM_1431160
description hypothetical protein
nr
ID XP_002512356.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RF37
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1431160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006096_010 0.2047487143 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000486_070 0.2149920865 - - hypothetical protein JCGZ_25069 [Jatropha curcas]
4 Hb_009233_030 0.2254332348 - - protein binding protein, putative [Ricinus communis]
5 Hb_000256_130 0.228635724 - - hypothetical protein 21 [Hevea brasiliensis]
6 Hb_003225_030 0.2367955479 - - Pectinesterase-4 precursor, putative [Ricinus communis]
7 Hb_000649_240 0.2382890962 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
8 Hb_000086_340 0.2423385497 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
9 Hb_002110_240 0.2446671361 - - clathrin assembly protein, putative [Ricinus communis]
10 Hb_000122_050 0.2460787291 - - conserved hypothetical protein [Ricinus communis]
11 Hb_029243_010 0.2486768971 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
12 Hb_002205_010 0.2511550976 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
13 Hb_020400_040 0.2533468276 - - PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Jatropha curcas]
14 Hb_008096_040 0.2533673717 - - hypothetical protein PRUPE_ppa001351mg [Prunus persica]
15 Hb_005663_070 0.2657426273 - - dehydrin protein [Manihot esculenta]
16 Hb_009222_020 0.2705396319 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
17 Hb_028487_020 0.2724423826 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
18 Hb_012008_010 0.2740430162 - - -
19 Hb_000210_010 0.2742291474 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
20 Hb_000302_260 0.2755536355 - - hypothetical protein [Bruguiera gymnorhiza]

Gene co-expression network

sample Hb_002272_010 Hb_002272_010 Hb_006096_010 Hb_006096_010 Hb_002272_010--Hb_006096_010 Hb_000486_070 Hb_000486_070 Hb_002272_010--Hb_000486_070 Hb_009233_030 Hb_009233_030 Hb_002272_010--Hb_009233_030 Hb_000256_130 Hb_000256_130 Hb_002272_010--Hb_000256_130 Hb_003225_030 Hb_003225_030 Hb_002272_010--Hb_003225_030 Hb_000649_240 Hb_000649_240 Hb_002272_010--Hb_000649_240 Hb_020400_040 Hb_020400_040 Hb_006096_010--Hb_020400_040 Hb_002110_240 Hb_002110_240 Hb_006096_010--Hb_002110_240 Hb_002205_010 Hb_002205_010 Hb_006096_010--Hb_002205_010 Hb_008864_070 Hb_008864_070 Hb_006096_010--Hb_008864_070 Hb_006096_010--Hb_009233_030 Hb_007379_020 Hb_007379_020 Hb_000486_070--Hb_007379_020 Hb_000486_070--Hb_002110_240 Hb_000486_070--Hb_000256_130 Hb_000486_070--Hb_002205_010 Hb_003014_020 Hb_003014_020 Hb_000486_070--Hb_003014_020 Hb_009233_030--Hb_002110_240 Hb_005663_070 Hb_005663_070 Hb_009233_030--Hb_005663_070 Hb_009233_030--Hb_000256_130 Hb_006909_060 Hb_006909_060 Hb_009233_030--Hb_006909_060 Hb_000008_110 Hb_000008_110 Hb_009233_030--Hb_000008_110 Hb_000023_250 Hb_000023_250 Hb_009233_030--Hb_000023_250 Hb_000256_130--Hb_000023_250 Hb_000364_040 Hb_000364_040 Hb_000256_130--Hb_000364_040 Hb_000976_280 Hb_000976_280 Hb_000256_130--Hb_000976_280 Hb_012107_010 Hb_012107_010 Hb_000256_130--Hb_012107_010 Hb_000634_070 Hb_000634_070 Hb_000256_130--Hb_000634_070 Hb_000256_130--Hb_005663_070 Hb_148891_010 Hb_148891_010 Hb_003225_030--Hb_148891_010 Hb_008096_040 Hb_008096_040 Hb_003225_030--Hb_008096_040 Hb_000861_010 Hb_000861_010 Hb_003225_030--Hb_000861_010 Hb_133311_010 Hb_133311_010 Hb_003225_030--Hb_133311_010 Hb_000612_040 Hb_000612_040 Hb_003225_030--Hb_000612_040 Hb_021888_050 Hb_021888_050 Hb_000649_240--Hb_021888_050 Hb_000432_040 Hb_000432_040 Hb_000649_240--Hb_000432_040 Hb_028487_020 Hb_028487_020 Hb_000649_240--Hb_028487_020 Hb_002097_200 Hb_002097_200 Hb_000649_240--Hb_002097_200 Hb_006788_140 Hb_006788_140 Hb_000649_240--Hb_006788_140 Hb_000451_070 Hb_000451_070 Hb_000649_240--Hb_000451_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.65292 1.38207 0.26293 0.507674 0.0978987 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.539386 0.942591 0.171836 0.152165 0

CAGE analysis