Hb_002272_030

Information

Type -
Description -
Location Contig2272: 11078-14727
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02590g
description POPTRDRAFT_240822; cation exchanger family protein
nr
ID XP_012089094.1
description PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
swissprot
ID O04034
description Cation/calcium exchanger 5 OS=Arabidopsis thaliana GN=CCX5 PE=2 SV=1
trembl
ID A0A067JHW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23369 PE=4 SV=1
Gene Ontology
ID GO:0005886
description cation calcium exchanger 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23670: 11043-14582
cDNA
(Sanger)
(ID:Location)		 013_D16.ab1: 13887-14582

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_030 0.0 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
2 Hb_020178_040 0.0375054593 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002042_050 0.0421181025 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
4 Hb_000567_230 0.0620159701 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
5 Hb_001723_100 0.0638992102 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
6 Hb_002830_010 0.0676464808 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
7 Hb_009288_010 0.0703407372 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_008748_030 0.0705848099 - - conserved hypothetical protein [Ricinus communis]
9 Hb_189216_010 0.0719487039 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
10 Hb_001716_040 0.0727053553 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
11 Hb_008948_020 0.0737316888 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
12 Hb_006100_020 0.0741336242 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
13 Hb_009658_030 0.0747927548 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
14 Hb_066920_030 0.0751689882 - - PREDICTED: adagio protein 1 [Jatropha curcas]
15 Hb_007839_020 0.0762944208 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006970_050 0.0764380901 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
17 Hb_002071_070 0.0770040061 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
18 Hb_004435_030 0.0780525199 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
19 Hb_003498_080 0.0784234325 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
20 Hb_000347_400 0.0789849654 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002272_030 Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002272_030--Hb_020178_040 Hb_002042_050 Hb_002042_050 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_001723_100 Hb_001723_100 Hb_002272_030--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010 Hb_009288_010 Hb_009288_010 Hb_002272_030--Hb_009288_010 Hb_020178_040--Hb_002042_050 Hb_020178_040--Hb_001723_100 Hb_002071_070 Hb_002071_070 Hb_020178_040--Hb_002071_070 Hb_000243_260 Hb_000243_260 Hb_020178_040--Hb_000243_260 Hb_000347_400 Hb_000347_400 Hb_020178_040--Hb_000347_400 Hb_002042_050--Hb_000243_260 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170 Hb_000567_230--Hb_001817_170 Hb_000703_190 Hb_000703_190 Hb_000567_230--Hb_000703_190 Hb_000567_230--Hb_006100_020 Hb_000139_080 Hb_000139_080 Hb_000567_230--Hb_000139_080 Hb_066920_030 Hb_066920_030 Hb_001723_100--Hb_066920_030 Hb_001404_110 Hb_001404_110 Hb_001723_100--Hb_001404_110 Hb_002631_210 Hb_002631_210 Hb_001723_100--Hb_002631_210 Hb_001723_100--Hb_000347_400 Hb_005582_040 Hb_005582_040 Hb_002830_010--Hb_005582_040 Hb_004030_080 Hb_004030_080 Hb_002830_010--Hb_004030_080 Hb_002830_010--Hb_002071_070 Hb_010515_020 Hb_010515_020 Hb_002830_010--Hb_010515_020 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_002830_010--Hb_001304_110 Hb_002686_230 Hb_002686_230 Hb_009288_010--Hb_002686_230 Hb_006970_050 Hb_006970_050 Hb_009288_010--Hb_006970_050 Hb_002259_170 Hb_002259_170 Hb_009288_010--Hb_002259_170 Hb_009288_010--Hb_006100_020 Hb_009288_010--Hb_002042_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.21336 13.1895 10.566 13.1296 4.66069 5.75669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19204 8.0934 10.5512 10.0192 12.3784

CAGE analysis