Hb_002272_040

Information

Type -
Description -
Location Contig2272: 15604-16729
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02610g
description POPTRDRAFT_570872; hypothetical protein
nr
ID XP_002319557.2
description hypothetical protein POPTR_0013s02610g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I7Y1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s02610g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_040 0.0 - - hypothetical protein POPTR_0013s02610g, partial [Populus trichocarpa]
2 Hb_011639_080 0.2455889903 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
3 Hb_001001_100 0.2694883699 - - PREDICTED: uncharacterized protein LOC105650392 [Jatropha curcas]
4 Hb_000243_090 0.2783066306 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
5 Hb_003416_050 0.2839749938 - - -
6 Hb_000028_120 0.2986557416 - - Os03g0221800 [Oryza sativa Japonica Group]
7 Hb_000613_040 0.3008893656 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002473_040 0.3107595149 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
9 Hb_000205_150 0.3158292754 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
10 Hb_001433_020 0.316789947 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
11 Hb_003026_030 0.3182008217 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
12 Hb_000946_170 0.3182413188 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
13 Hb_000710_080 0.3228668341 - - hypothetical protein EUTSA_v10023022mg [Eutrema salsugineum]
14 Hb_000454_190 0.3336171777 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
15 Hb_000010_130 0.335765795 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
16 Hb_019516_030 0.3399067898 - - Calcyclin-binding protein, putative [Ricinus communis]
17 Hb_005276_130 0.3406010031 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002450_140 0.3451642714 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
19 Hb_001999_080 0.3480022583 - - CCCH-type zinc finger protein [Hevea brasiliensis]
20 Hb_006913_090 0.3486555746 - - PREDICTED: uncharacterized protein LOC101215996 [Cucumis sativus]

Gene co-expression network

sample Hb_002272_040 Hb_002272_040 Hb_011639_080 Hb_011639_080 Hb_002272_040--Hb_011639_080 Hb_001001_100 Hb_001001_100 Hb_002272_040--Hb_001001_100 Hb_000243_090 Hb_000243_090 Hb_002272_040--Hb_000243_090 Hb_003416_050 Hb_003416_050 Hb_002272_040--Hb_003416_050 Hb_000028_120 Hb_000028_120 Hb_002272_040--Hb_000028_120 Hb_000613_040 Hb_000613_040 Hb_002272_040--Hb_000613_040 Hb_000454_190 Hb_000454_190 Hb_011639_080--Hb_000454_190 Hb_011639_080--Hb_000243_090 Hb_019516_030 Hb_019516_030 Hb_011639_080--Hb_019516_030 Hb_006570_010 Hb_006570_010 Hb_011639_080--Hb_006570_010 Hb_002150_110 Hb_002150_110 Hb_011639_080--Hb_002150_110 Hb_000175_630 Hb_000175_630 Hb_011639_080--Hb_000175_630 Hb_001001_100--Hb_003416_050 Hb_007044_100 Hb_007044_100 Hb_001001_100--Hb_007044_100 Hb_011861_060 Hb_011861_060 Hb_001001_100--Hb_011861_060 Hb_143629_140 Hb_143629_140 Hb_001001_100--Hb_143629_140 Hb_002157_130 Hb_002157_130 Hb_001001_100--Hb_002157_130 Hb_007416_370 Hb_007416_370 Hb_000243_090--Hb_007416_370 Hb_098315_070 Hb_098315_070 Hb_000243_090--Hb_098315_070 Hb_149838_010 Hb_149838_010 Hb_000243_090--Hb_149838_010 Hb_007456_010 Hb_007456_010 Hb_000243_090--Hb_007456_010 Hb_000265_220 Hb_000265_220 Hb_000243_090--Hb_000265_220 Hb_011030_030 Hb_011030_030 Hb_003416_050--Hb_011030_030 Hb_068804_040 Hb_068804_040 Hb_003416_050--Hb_068804_040 Hb_000032_060 Hb_000032_060 Hb_003416_050--Hb_000032_060 Hb_177132_010 Hb_177132_010 Hb_003416_050--Hb_177132_010 Hb_004354_010 Hb_004354_010 Hb_000028_120--Hb_004354_010 Hb_000200_320 Hb_000200_320 Hb_000028_120--Hb_000200_320 Hb_003041_060 Hb_003041_060 Hb_000028_120--Hb_003041_060 Hb_111722_010 Hb_111722_010 Hb_000028_120--Hb_111722_010 Hb_000028_120--Hb_003416_050 Hb_007229_030 Hb_007229_030 Hb_000613_040--Hb_007229_030 Hb_027472_130 Hb_027472_130 Hb_000613_040--Hb_027472_130 Hb_000205_150 Hb_000205_150 Hb_000613_040--Hb_000205_150 Hb_000010_130 Hb_000010_130 Hb_000613_040--Hb_000010_130 Hb_000313_290 Hb_000313_290 Hb_000613_040--Hb_000313_290 Hb_000318_240 Hb_000318_240 Hb_000613_040--Hb_000318_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.103168 0.333434 0 0.572706 0.161838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140679 0.110513 0 0.0460691 0.205262

CAGE analysis