Hb_002272_050

Information

Type -
Description -
Location Contig2272: 18766-22343
Sequence    

Annotation

kegg
ID rcu:RCOM_1431020
description microsomal signal peptidase 23 kD subunit, putative
nr
ID XP_002512352.1
description microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
swissprot
ID Q53YF3
description Signal peptidase complex subunit 3B OS=Arabidopsis thaliana GN=At5g27430 PE=2 SV=1
trembl
ID B9RF33
description Microsomal signal peptidase 23 kD subunit, putative OS=Ricinus communis GN=RCOM_1431020 PE=4 SV=1
Gene Ontology
ID GO:0005787
description signal peptidase complex subunit 3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23674: 18808-22320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_050 0.0 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
2 Hb_000875_080 0.0558924292 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
3 Hb_171900_090 0.0580596933 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000336_210 0.0594297986 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
5 Hb_000359_040 0.0644614111 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005271_040 0.0717454735 - - PREDICTED: serine racemase [Jatropha curcas]
7 Hb_000297_160 0.0718961273 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
8 Hb_000803_270 0.0721923771 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
9 Hb_007007_040 0.0733200025 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
10 Hb_001723_150 0.0738477523 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
11 Hb_000086_170 0.0753009203 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
12 Hb_003213_010 0.077523674 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
13 Hb_001959_110 0.0775805108 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
14 Hb_000049_140 0.078112219 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
15 Hb_000345_510 0.0791909298 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
16 Hb_002936_010 0.0794378718 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
17 Hb_004109_320 0.0800261098 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
18 Hb_163175_010 0.0803021235 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
19 Hb_002909_040 0.0805811064 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
20 Hb_004994_010 0.0815717536 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002272_050 Hb_002272_050 Hb_000875_080 Hb_000875_080 Hb_002272_050--Hb_000875_080 Hb_171900_090 Hb_171900_090 Hb_002272_050--Hb_171900_090 Hb_000336_210 Hb_000336_210 Hb_002272_050--Hb_000336_210 Hb_000359_040 Hb_000359_040 Hb_002272_050--Hb_000359_040 Hb_005271_040 Hb_005271_040 Hb_002272_050--Hb_005271_040 Hb_000297_160 Hb_000297_160 Hb_002272_050--Hb_000297_160 Hb_000875_080--Hb_000336_210 Hb_000049_140 Hb_000049_140 Hb_000875_080--Hb_000049_140 Hb_000875_080--Hb_000297_160 Hb_000875_080--Hb_005271_040 Hb_000875_080--Hb_171900_090 Hb_000789_320 Hb_000789_320 Hb_171900_090--Hb_000789_320 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_171900_090--Hb_001025_090 Hb_000905_110 Hb_000905_110 Hb_000336_210--Hb_000905_110 Hb_014834_150 Hb_014834_150 Hb_000336_210--Hb_014834_150 Hb_000336_210--Hb_171900_090 Hb_000336_210--Hb_000297_160 Hb_004994_010 Hb_004994_010 Hb_000359_040--Hb_004994_010 Hb_001408_140 Hb_001408_140 Hb_000359_040--Hb_001408_140 Hb_001789_060 Hb_001789_060 Hb_000359_040--Hb_001789_060 Hb_001456_060 Hb_001456_060 Hb_000359_040--Hb_001456_060 Hb_000339_040 Hb_000339_040 Hb_000359_040--Hb_000339_040 Hb_000260_470 Hb_000260_470 Hb_005271_040--Hb_000260_470 Hb_163175_010 Hb_163175_010 Hb_005271_040--Hb_163175_010 Hb_002681_100 Hb_002681_100 Hb_005271_040--Hb_002681_100 Hb_000663_060 Hb_000663_060 Hb_005271_040--Hb_000663_060 Hb_000270_680 Hb_000270_680 Hb_000297_160--Hb_000270_680 Hb_001959_110 Hb_001959_110 Hb_000297_160--Hb_001959_110 Hb_005144_090 Hb_005144_090 Hb_000297_160--Hb_005144_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6797 16.7998 31.6386 23.2208 20.3195 14.0767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3776 21.2182 12.5877 20.1448 12.2927

CAGE analysis