Hb_002272_070

Information

Type -
Description -
Location Contig2272: 43290-45697
Sequence    

Annotation

kegg
ID pop:POPTR_0005s03840g
description hypothetical protein
nr
ID XP_012089097.1
description PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JU71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23373 PE=4 SV=1
Gene Ontology
ID GO:0046872
description type i cytoskeletal 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23675: 43116-45700 , PASA_asmbl_23676: 43116-45700
cDNA
(Sanger)
(ID:Location)		 020_H19.ab1: 44504-45698 , 041_K24.ab1: 44504-45698

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_070 0.0 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
2 Hb_002329_030 0.0651671763 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
3 Hb_000072_160 0.0668983077 - - proline oxidase [Manihot esculenta]
4 Hb_011470_010 0.0723638877 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
5 Hb_126466_010 0.0913637111 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_006615_190 0.0974888446 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
7 Hb_145139_010 0.098765606 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
8 Hb_014361_130 0.1013241042 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
9 Hb_000007_210 0.1155914821 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
10 Hb_007237_090 0.1171684222 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000816_050 0.1196537007 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_000976_340 0.1225137788 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_084127_010 0.1227866112 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_085010_010 0.1228417247 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
15 Hb_002968_010 0.1276685469 - - PREDICTED: pectinesterase [Jatropha curcas]
16 Hb_000028_460 0.1281063364 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
17 Hb_001823_070 0.1346361261 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
18 Hb_002477_080 0.1384390634 - - hypothetical protein RCOM_0653450 [Ricinus communis]
19 Hb_000172_010 0.1392232745 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
20 Hb_002239_020 0.1417139584 - - MLO, putative [Theobroma cacao]

Gene co-expression network

sample Hb_002272_070 Hb_002272_070 Hb_002329_030 Hb_002329_030 Hb_002272_070--Hb_002329_030 Hb_000072_160 Hb_000072_160 Hb_002272_070--Hb_000072_160 Hb_011470_010 Hb_011470_010 Hb_002272_070--Hb_011470_010 Hb_126466_010 Hb_126466_010 Hb_002272_070--Hb_126466_010 Hb_006615_190 Hb_006615_190 Hb_002272_070--Hb_006615_190 Hb_145139_010 Hb_145139_010 Hb_002272_070--Hb_145139_010 Hb_002329_030--Hb_000072_160 Hb_000007_210 Hb_000007_210 Hb_002329_030--Hb_000007_210 Hb_014361_130 Hb_014361_130 Hb_002329_030--Hb_014361_130 Hb_002329_030--Hb_006615_190 Hb_084127_010 Hb_084127_010 Hb_002329_030--Hb_084127_010 Hb_000072_160--Hb_006615_190 Hb_000072_160--Hb_145139_010 Hb_002968_010 Hb_002968_010 Hb_000072_160--Hb_002968_010 Hb_000072_160--Hb_014361_130 Hb_085010_010 Hb_085010_010 Hb_011470_010--Hb_085010_010 Hb_011470_010--Hb_000072_160 Hb_011470_010--Hb_126466_010 Hb_011470_010--Hb_002329_030 Hb_011470_010--Hb_014361_130 Hb_001823_070 Hb_001823_070 Hb_126466_010--Hb_001823_070 Hb_003439_020 Hb_003439_020 Hb_126466_010--Hb_003439_020 Hb_000028_460 Hb_000028_460 Hb_126466_010--Hb_000028_460 Hb_002477_080 Hb_002477_080 Hb_126466_010--Hb_002477_080 Hb_007237_090 Hb_007237_090 Hb_006615_190--Hb_007237_090 Hb_006615_190--Hb_084127_010 Hb_000579_220 Hb_000579_220 Hb_006615_190--Hb_000579_220 Hb_000172_010 Hb_000172_010 Hb_006615_190--Hb_000172_010 Hb_145139_010--Hb_002968_010 Hb_000656_370 Hb_000656_370 Hb_145139_010--Hb_000656_370 Hb_002097_210 Hb_002097_210 Hb_145139_010--Hb_002097_210 Hb_002475_010 Hb_002475_010 Hb_145139_010--Hb_002475_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136424 35.2069 3.10124 19.6406 0.133699 0.0689656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0244537 0.0192403 0 12.8461 11.6441

CAGE analysis