Hb_002272_090

Information

Type -
Description -
Location Contig2272: 50151-50577
Sequence    

Annotation

kegg
ID tcc:TCM_026592
description RING/U-box superfamily protein
nr
ID XP_007030903.1
description RING/U-box superfamily protein [Theobroma cacao]
swissprot
ID Q84ME1
description Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana GN=LUL3 PE=1 SV=1
trembl
ID A0A061F239
description RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_026592 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_090 0.0 - - RING/U-box superfamily protein [Theobroma cacao]
2 Hb_145084_010 0.1517721996 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
3 Hb_000329_250 0.1547081362 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
4 Hb_008566_020 0.1611427151 - - sodium/hydrogen exchanger, putative [Ricinus communis]
5 Hb_007181_070 0.1624998485 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
6 Hb_000742_110 0.1676385524 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
7 Hb_010883_070 0.1745159346 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
8 Hb_003398_120 0.1780037251 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
9 Hb_001700_020 0.1800598206 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
10 Hb_000496_120 0.1805285581 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
11 Hb_000907_170 0.1808805297 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_000317_400 0.1817335795 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
13 Hb_002138_010 0.1825157789 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
14 Hb_032260_030 0.1825600766 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
15 Hb_000815_260 0.1846082777 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
16 Hb_000001_070 0.1864122599 - - -
17 Hb_014324_030 0.1877592837 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
18 Hb_154826_010 0.1880997832 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_002609_060 0.1894456681 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
20 Hb_001016_090 0.1894987342 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_002272_090 Hb_002272_090 Hb_145084_010 Hb_145084_010 Hb_002272_090--Hb_145084_010 Hb_000329_250 Hb_000329_250 Hb_002272_090--Hb_000329_250 Hb_008566_020 Hb_008566_020 Hb_002272_090--Hb_008566_020 Hb_007181_070 Hb_007181_070 Hb_002272_090--Hb_007181_070 Hb_000742_110 Hb_000742_110 Hb_002272_090--Hb_000742_110 Hb_010883_070 Hb_010883_070 Hb_002272_090--Hb_010883_070 Hb_002609_060 Hb_002609_060 Hb_145084_010--Hb_002609_060 Hb_000363_200 Hb_000363_200 Hb_145084_010--Hb_000363_200 Hb_000907_170 Hb_000907_170 Hb_145084_010--Hb_000907_170 Hb_001863_090 Hb_001863_090 Hb_145084_010--Hb_001863_090 Hb_003097_210 Hb_003097_210 Hb_145084_010--Hb_003097_210 Hb_001016_090 Hb_001016_090 Hb_145084_010--Hb_001016_090 Hb_000496_120 Hb_000496_120 Hb_000329_250--Hb_000496_120 Hb_006698_030 Hb_006698_030 Hb_000329_250--Hb_006698_030 Hb_001136_010 Hb_001136_010 Hb_000329_250--Hb_001136_010 Hb_165669_010 Hb_165669_010 Hb_000329_250--Hb_165669_010 Hb_000317_400 Hb_000317_400 Hb_000329_250--Hb_000317_400 Hb_001653_020 Hb_001653_020 Hb_000329_250--Hb_001653_020 Hb_000608_420 Hb_000608_420 Hb_008566_020--Hb_000608_420 Hb_006153_120 Hb_006153_120 Hb_008566_020--Hb_006153_120 Hb_000101_170 Hb_000101_170 Hb_008566_020--Hb_000101_170 Hb_154826_010 Hb_154826_010 Hb_008566_020--Hb_154826_010 Hb_000189_640 Hb_000189_640 Hb_008566_020--Hb_000189_640 Hb_093458_050 Hb_093458_050 Hb_007181_070--Hb_093458_050 Hb_011953_020 Hb_011953_020 Hb_007181_070--Hb_011953_020 Hb_000599_350 Hb_000599_350 Hb_007181_070--Hb_000599_350 Hb_007181_070--Hb_000363_200 Hb_005614_050 Hb_005614_050 Hb_007181_070--Hb_005614_050 Hb_010560_040 Hb_010560_040 Hb_007181_070--Hb_010560_040 Hb_000742_110--Hb_010560_040 Hb_000742_110--Hb_003097_210 Hb_181600_010 Hb_181600_010 Hb_000742_110--Hb_181600_010 Hb_155764_010 Hb_155764_010 Hb_000742_110--Hb_155764_010 Hb_000865_070 Hb_000865_070 Hb_000742_110--Hb_000865_070 Hb_048476_050 Hb_048476_050 Hb_000742_110--Hb_048476_050 Hb_003702_080 Hb_003702_080 Hb_010883_070--Hb_003702_080 Hb_000367_030 Hb_000367_030 Hb_010883_070--Hb_000367_030 Hb_008725_040 Hb_008725_040 Hb_010883_070--Hb_008725_040 Hb_004333_030 Hb_004333_030 Hb_010883_070--Hb_004333_030 Hb_103118_020 Hb_103118_020 Hb_010883_070--Hb_103118_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178999 0.411257 0.223035 0.771511 0.62859 1.17536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7001 2.67094 1.58609 1.72847 0

CAGE analysis