Hb_002272_120

Information

Type -
Description -
Location Contig2272: 55248-57889
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02660g
description POPTRDRAFT_1096303; hypothetical protein
nr
ID XP_012089099.1
description PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
swissprot
ID Q0WRY5
description Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1
trembl
ID A0A067JI35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23375 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase cdl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23678: 55396-58077 , PASA_asmbl_23679: 55150-58698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_120 0.0 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
2 Hb_085962_010 0.0846101694 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
3 Hb_001396_030 0.1000963529 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
4 Hb_000735_020 0.1016028272 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
5 Hb_027506_030 0.1028438889 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
6 Hb_011918_070 0.1049784049 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
7 Hb_006788_110 0.1064207651 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
8 Hb_000303_060 0.1081987182 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_001085_190 0.1116761913 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
10 Hb_012518_080 0.1144862867 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
11 Hb_001287_090 0.1150775409 - - Endoglucanase 4 [Aegilops tauschii]
12 Hb_000996_030 0.116656048 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
13 Hb_033312_070 0.120810899 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
14 Hb_010264_020 0.1210173421 - - unnamed protein product [Vitis vinifera]
15 Hb_004804_010 0.121741771 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
16 Hb_002073_170 0.1217421525 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
17 Hb_001541_130 0.1218999188 - - GDSL esterase/lipase [Morus notabilis]
18 Hb_004696_010 0.1224244286 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
19 Hb_005542_120 0.1225171785 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
20 Hb_001140_300 0.1255135159 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]

Gene co-expression network

sample Hb_002272_120 Hb_002272_120 Hb_085962_010 Hb_085962_010 Hb_002272_120--Hb_085962_010 Hb_001396_030 Hb_001396_030 Hb_002272_120--Hb_001396_030 Hb_000735_020 Hb_000735_020 Hb_002272_120--Hb_000735_020 Hb_027506_030 Hb_027506_030 Hb_002272_120--Hb_027506_030 Hb_011918_070 Hb_011918_070 Hb_002272_120--Hb_011918_070 Hb_006788_110 Hb_006788_110 Hb_002272_120--Hb_006788_110 Hb_085962_010--Hb_001396_030 Hb_085962_010--Hb_027506_030 Hb_000303_060 Hb_000303_060 Hb_085962_010--Hb_000303_060 Hb_004804_010 Hb_004804_010 Hb_085962_010--Hb_004804_010 Hb_010264_020 Hb_010264_020 Hb_085962_010--Hb_010264_020 Hb_001396_030--Hb_027506_030 Hb_000112_080 Hb_000112_080 Hb_001396_030--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_001396_030--Hb_007218_040 Hb_001396_030--Hb_000303_060 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120 Hb_001085_190 Hb_001085_190 Hb_000735_020--Hb_001085_190 Hb_012518_080 Hb_012518_080 Hb_000735_020--Hb_012518_080 Hb_000735_020--Hb_011918_070 Hb_033312_070 Hb_033312_070 Hb_000735_020--Hb_033312_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_000735_020--Hb_006788_110 Hb_027506_030--Hb_004804_010 Hb_027506_030--Hb_010264_020 Hb_027506_030--Hb_000303_060 Hb_032572_010 Hb_032572_010 Hb_027506_030--Hb_032572_010 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_004696_010 Hb_004696_010 Hb_011918_070--Hb_004696_010 Hb_006788_110--Hb_033312_070 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_004531_160 Hb_004531_160 Hb_006788_110--Hb_004531_160 Hb_000984_130 Hb_000984_130 Hb_006788_110--Hb_000984_130 Hb_006788_110--Hb_011918_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.163684 1.2901 2.40036 0 0.0463196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0509174 0.369583 1.13357

CAGE analysis