Hb_002272_140

Information

Type -
Description -
Location Contig2272: 63051-64202
Sequence    

Annotation

kegg
ID rcu:RCOM_1430830
description ring finger protein, putative
nr
ID XP_012089102.1
description PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
swissprot
ID Q8RXX9
description E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2
trembl
ID A0A067JVI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23377 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase atl6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_140 0.0 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
2 Hb_012702_010 0.1038596823 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
3 Hb_000103_400 0.1136826283 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
4 Hb_138628_010 0.1140804547 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_019961_010 0.1158165239 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
6 Hb_002284_020 0.122010899 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
7 Hb_000473_080 0.1256245824 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
8 Hb_000003_420 0.1283965534 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_000181_080 0.1345378955 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
10 Hb_009083_010 0.146901467 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
11 Hb_000172_300 0.1501875867 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
12 Hb_022206_030 0.1572866211 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
13 Hb_010080_020 0.1586016067 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
14 Hb_000397_090 0.1601604394 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
15 Hb_021596_070 0.161304936 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
16 Hb_000322_120 0.1627418219 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
17 Hb_073119_010 0.1648162093 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
18 Hb_005568_060 0.1649869344 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
19 Hb_174380_010 0.1660495 - - kinase, putative [Ricinus communis]
20 Hb_007433_020 0.1678753826 - - hypothetical protein VITISV_005320 [Vitis vinifera]

Gene co-expression network

sample Hb_002272_140 Hb_002272_140 Hb_012702_010 Hb_012702_010 Hb_002272_140--Hb_012702_010 Hb_000103_400 Hb_000103_400 Hb_002272_140--Hb_000103_400 Hb_138628_010 Hb_138628_010 Hb_002272_140--Hb_138628_010 Hb_019961_010 Hb_019961_010 Hb_002272_140--Hb_019961_010 Hb_002284_020 Hb_002284_020 Hb_002272_140--Hb_002284_020 Hb_000473_080 Hb_000473_080 Hb_002272_140--Hb_000473_080 Hb_012702_010--Hb_019961_010 Hb_012702_010--Hb_138628_010 Hb_000172_300 Hb_000172_300 Hb_012702_010--Hb_000172_300 Hb_004531_010 Hb_004531_010 Hb_012702_010--Hb_004531_010 Hb_011054_030 Hb_011054_030 Hb_012702_010--Hb_011054_030 Hb_000181_080 Hb_000181_080 Hb_000103_400--Hb_000181_080 Hb_000103_400--Hb_000473_080 Hb_006414_020 Hb_006414_020 Hb_000103_400--Hb_006414_020 Hb_000359_080 Hb_000359_080 Hb_000103_400--Hb_000359_080 Hb_000803_060 Hb_000803_060 Hb_000103_400--Hb_000803_060 Hb_138628_010--Hb_019961_010 Hb_181824_010 Hb_181824_010 Hb_138628_010--Hb_181824_010 Hb_000003_420 Hb_000003_420 Hb_138628_010--Hb_000003_420 Hb_005568_060 Hb_005568_060 Hb_138628_010--Hb_005568_060 Hb_000133_060 Hb_000133_060 Hb_019961_010--Hb_000133_060 Hb_007433_020 Hb_007433_020 Hb_019961_010--Hb_007433_020 Hb_008667_020 Hb_008667_020 Hb_019961_010--Hb_008667_020 Hb_002284_020--Hb_000473_080 Hb_000322_120 Hb_000322_120 Hb_002284_020--Hb_000322_120 Hb_174380_010 Hb_174380_010 Hb_002284_020--Hb_174380_010 Hb_002284_020--Hb_000003_420 Hb_021596_070 Hb_021596_070 Hb_002284_020--Hb_021596_070 Hb_000473_080--Hb_000359_080 Hb_000473_080--Hb_000003_420 Hb_000752_020 Hb_000752_020 Hb_000473_080--Hb_000752_020 Hb_073119_010 Hb_073119_010 Hb_000473_080--Hb_073119_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.235 341.07 53.2915 53.046 3.84126 3.79896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9201 12.3341 4.29289 57.3215 8.0966

CAGE analysis